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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
HMSFFNKIILIGRLVRDPEERYTLTPVTTFTIAVDRTTDFFRIVTFGRLAEFARTYLTKG
RLVLVEGEMRMRRKRVSPEVVANVVRFMD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1z9f-a2-m4-cA 89 89 1.0000 1.0000 1.0000 2.01e-59 1z9f-a2-m1-cA_1z9f-a2-m4-cA, 1z9f-a2-m3-cA_1z9f-a2-m4-cA
2 1z9f-a2-m3-cA 89 89 1.0000 1.0000 1.0000 2.01e-59 1z9f-a2-m3-cA_1z9f-a2-m4-cA
3 1z9f-a2-m1-cA 89 89 1.0000 1.0000 1.0000 2.01e-59 1z9f-a2-m1-cA_1z9f-a2-m4-cA
4 1sru-a1-m1-cC 96 84 0.4157 0.3854 0.4405 4.80e-18 1sru-a1-m1-cC_1sru-a1-m1-cA
5 1kaw-a1-m1-cD 96 86 0.4045 0.3750 0.4186 5.23e-17 1kaw-a1-m1-cC_1kaw-a1-m1-cD
6 1kaw-a1-m1-cC 96 86 0.4045 0.3750 0.4186 5.23e-17 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
7 1kaw-a1-m1-cA 96 86 0.4045 0.3750 0.4186 5.23e-17 1kaw-a1-m1-cA_1kaw-a1-m1-cC
8 7d8j-a1-m2-cB 98 96 0.4270 0.3878 0.3958 3.95e-16 7d8j-a1-m2-cB_7d8j-a1-m1-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
9 1sru-a1-m1-cA 100 88 0.4270 0.3800 0.4318 6.22e-16 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
10 1sru-a1-m1-cD 101 94 0.4382 0.3861 0.4149 7.67e-16 1sru-a1-m1-cA_1sru-a1-m1-cD
11 7f25-a1-m1-cB 106 75 0.3596 0.3019 0.4267 1.34e-15 7f25-a1-m1-cA_7f25-a1-m1-cB
12 7f25-a1-m1-cA 106 75 0.3596 0.3019 0.4267 1.34e-15 7f25-a1-m1-cA_7f25-a1-m1-cB
13 6bhx-a1-m1-cA 98 97 0.4719 0.4286 0.4330 6.34e-15 6bhx-a1-m1-cA_6bhx-a1-m1-cC
14 7d8j-a1-m2-cA 112 103 0.4494 0.3571 0.3883 1.15e-14 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
15 7d8j-a1-m1-cA 112 103 0.4494 0.3571 0.3883 1.15e-14 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m1-cA
16 6bhw-a2-m1-cF 96 76 0.3933 0.3646 0.4605 2.35e-14 6bhw-a2-m1-cF_6bhw-a2-m1-cE
17 6bhx-a1-m1-cC 102 101 0.4719 0.4118 0.4158 2.49e-14 6bhx-a1-m1-cA_6bhx-a1-m1-cC
18 4mz9-a1-m1-cD 114 105 0.4382 0.3421 0.3714 3.57e-14 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
19 4mz9-a1-m1-cC 114 105 0.4382 0.3421 0.3714 3.57e-14 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
20 4mz9-a1-m1-cB 114 105 0.4382 0.3421 0.3714 3.57e-14 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
21 5odn-a1-m1-cE 105 100 0.4270 0.3619 0.3800 4.76e-14 5odn-a1-m1-cG_5odn-a1-m1-cE
22 5odn-a1-m1-cH 99 93 0.4157 0.3737 0.3978 4.91e-14 5odn-a1-m1-cA_5odn-a1-m1-cH
23 5odn-a1-m1-cA 99 93 0.4157 0.3737 0.3978 4.91e-14 5odn-a1-m1-cA_5odn-a1-m1-cD, 5odn-a1-m1-cA_5odn-a1-m1-cH
24 6bhw-a2-m1-cE 99 101 0.4719 0.4242 0.4158 5.36e-14 6bhw-a2-m1-cE_6bhw-a2-m1-cG, 6bhw-a2-m1-cF_6bhw-a2-m1-cE
25 5odn-a1-m1-cF 105 100 0.4270 0.3619 0.3800 5.49e-14 5odn-a1-m1-cC_5odn-a1-m1-cF
26 5odn-a1-m1-cD 106 94 0.4157 0.3491 0.3936 6.75e-14 5odn-a1-m1-cA_5odn-a1-m1-cD
27 5odn-a1-m1-cC 102 95 0.4157 0.3627 0.3895 1.01e-13 5odn-a1-m1-cC_5odn-a1-m1-cF
28 6bhw-a2-m1-cG 101 100 0.4494 0.3960 0.4000 1.51e-13 6bhw-a2-m1-cE_6bhw-a2-m1-cG
29 3tqy-a1-m1-cD 96 89 0.4157 0.3854 0.4157 1.72e-13 3tqy-a1-m1-cD_3tqy-a1-m1-cC
30 5xgt-a1-m1-cA 104 103 0.4270 0.3654 0.3689 1.91e-13 5xgt-a1-m1-cA_5xgt-a1-m1-cB
31 3vdy-a1-m1-cA 101 103 0.4270 0.3762 0.3689 2.05e-13 3vdy-a1-m2-cB_3vdy-a1-m1-cA
32 5odn-a1-m1-cG 102 97 0.4157 0.3627 0.3814 2.19e-13 5odn-a1-m1-cG_5odn-a1-m1-cE
33 5xgt-a1-m1-cB 105 103 0.4270 0.3619 0.3689 2.32e-13 5xgt-a1-m1-cA_5xgt-a1-m1-cB
34 3vdy-a1-m2-cB 97 97 0.4045 0.3711 0.3711 3.77e-13 3vdy-a1-m1-cB_3vdy-a1-m2-cB, 3vdy-a1-m2-cB_3vdy-a1-m1-cA
35 3vdy-a1-m1-cB 97 97 0.4045 0.3711 0.3711 3.77e-13 3vdy-a1-m1-cB_3vdy-a1-m2-cB
36 5odp-a1-m1-cA 99 97 0.4045 0.3636 0.3711 1.25e-12 5odp-a1-m1-cA_5odp-a1-m1-cG
37 3tqy-a1-m1-cC 106 99 0.4157 0.3491 0.3737 6.82e-12 3tqy-a1-m1-cD_3tqy-a1-m1-cC
38 5odp-a1-m1-cG 100 97 0.3933 0.3500 0.3608 9.80e-12 5odp-a1-m1-cA_5odp-a1-m1-cG
39 2vw9-a1-m2-cB 105 104 0.3596 0.3048 0.3077 1.61e-08 2vw9-a1-m1-cB_2vw9-a1-m2-cB
40 2vw9-a1-m1-cB 105 104 0.3596 0.3048 0.3077 1.61e-08 2vw9-a1-m1-cB_2vw9-a1-m2-cB
41 3lgj-a1-m1-cA 95 75 0.3146 0.2947 0.3733 2.72e-08 3lgj-a1-m1-cA_3lgj-a1-m1-cB
42 3lgj-a1-m1-cB 97 76 0.3146 0.2887 0.3684 1.93e-07 3lgj-a1-m1-cA_3lgj-a1-m1-cB
43 3udg-a2-m1-cB 214 83 0.3483 0.1449 0.3735 6.77e-06 3udg-a2-m1-cB_3udg-a2-m1-cC
44 3udg-a2-m1-cB 214 37 0.1461 0.0607 0.3514 0.28 3udg-a2-m1-cB_3udg-a2-m1-cC
45 2fxq-a1-m2-cA 197 68 0.3146 0.1421 0.4118 8.46e-06 2fxq-a1-m1-cA_2fxq-a1-m2-cA
46 2fxq-a1-m2-cA 197 81 0.2809 0.1269 0.3086 0.001 2fxq-a1-m1-cA_2fxq-a1-m2-cA
47 2fxq-a1-m1-cA 197 68 0.3146 0.1421 0.4118 8.46e-06 2fxq-a1-m1-cA_2fxq-a1-m2-cA
48 2fxq-a1-m1-cA 197 81 0.2809 0.1269 0.3086 0.001 2fxq-a1-m1-cA_2fxq-a1-m2-cA
49 3pgz-a1-m1-cA 109 79 0.2921 0.2385 0.3291 1.36e-05 3pgz-a1-m1-cA_3pgz-a1-m1-cB
50 3ulp-a1-m1-cB 114 89 0.3258 0.2544 0.3258 1.37e-05 3ulp-a1-m1-cD_3ulp-a1-m1-cB
51 2ihf-a1-m2-cA 205 68 0.3034 0.1317 0.3971 1.61e-05 2ihf-a1-m1-cA_2ihf-a1-m2-cA
52 2ihf-a1-m2-cA 205 93 0.3034 0.1317 0.2903 5.45e-04 2ihf-a1-m1-cA_2ihf-a1-m2-cA
53 2ihf-a1-m1-cA 205 68 0.3034 0.1317 0.3971 1.61e-05 2ihf-a1-m1-cA_2ihf-a1-m2-cA
54 2ihf-a1-m1-cA 205 93 0.3034 0.1317 0.2903 5.45e-04 2ihf-a1-m1-cA_2ihf-a1-m2-cA
55 3ulp-a1-m1-cA 114 97 0.3371 0.2632 0.3093 1.82e-05 3ulp-a1-m1-cD_3ulp-a1-m1-cA
56 3ulp-a1-m1-cD 113 88 0.3146 0.2478 0.3182 2.76e-05 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
57 3udg-a2-m1-cC 214 85 0.3258 0.1355 0.3412 3.54e-05 3udg-a2-m1-cB_3udg-a2-m1-cC
58 3udg-a2-m1-cC 214 37 0.1461 0.0607 0.3514 0.29 3udg-a2-m1-cB_3udg-a2-m1-cC
59 3pgz-a1-m1-cB 114 84 0.3146 0.2456 0.3333 7.01e-05 3pgz-a1-m1-cA_3pgz-a1-m1-cB
60 1se8-a1-m2-cA 205 85 0.3820 0.1659 0.4000 7.86e-05 1se8-a1-m1-cA_1se8-a1-m2-cA
61 1se8-a1-m2-cA 205 37 0.1573 0.0683 0.3784 0.19 1se8-a1-m1-cA_1se8-a1-m2-cA
62 1se8-a1-m1-cA 205 85 0.3820 0.1659 0.4000 7.86e-05 1se8-a1-m1-cA_1se8-a1-m2-cA
63 1se8-a1-m1-cA 205 37 0.1573 0.0683 0.3784 0.19 1se8-a1-m1-cA_1se8-a1-m2-cA
64 3ulp-a1-m1-cC 116 84 0.3146 0.2414 0.3333 8.63e-05 3ulp-a1-m1-cD_3ulp-a1-m1-cC
65 1ue7-a2-m3-cD 95 76 0.2921 0.2737 0.3421 1.99e-04 1ue7-a2-m1-cD_1ue7-a2-m3-cD
66 1ue7-a2-m1-cD 95 76 0.2921 0.2737 0.3421 1.99e-04 1ue7-a2-m1-cD_1ue7-a2-m3-cD
67 1ue7-a1-m2-cB 98 75 0.2809 0.2551 0.3333 4.39e-04 1ue7-a1-m2-cB_1ue7-a1-m1-cA, 1ue7-a1-m2-cB_1ue7-a1-m2-cA
68 2dud-a2-m2-cB 92 68 0.2584 0.2500 0.3382 6.49e-04 2dud-a2-m2-cB_2dud-a2-m1-cA, 2dud-a2-m2-cB_2dud-a2-m2-cA
69 2dud-a2-m2-cA 95 71 0.2697 0.2526 0.3380 7.58e-04 2dud-a2-m2-cB_2dud-a2-m2-cA
70 2dud-a2-m1-cA 95 71 0.2697 0.2526 0.3380 7.58e-04 2dud-a2-m2-cB_2dud-a2-m1-cA
71 7f5y-a1-m2-cA 109 77 0.2809 0.2294 0.3247 8.23e-04 7f5y-a1-m2-cA_7f5y-a1-m2-cB
72 1ue7-a1-m2-cA 106 74 0.2809 0.2358 0.3378 0.003 1ue7-a1-m2-cB_1ue7-a1-m2-cA
73 1ue7-a1-m1-cA 106 74 0.2809 0.2358 0.3378 0.003 1ue7-a1-m2-cB_1ue7-a1-m1-cA
74 1ue1-a1-m2-cB 119 92 0.3483 0.2605 0.3370 0.004 1ue1-a1-m1-cB_1ue1-a1-m2-cB
75 1ue1-a1-m1-cB 119 92 0.3483 0.2605 0.3370 0.004 1ue1-a1-m1-cB_1ue1-a1-m2-cB
76 7f5y-a1-m2-cB 120 86 0.3034 0.2250 0.3140 0.005 7f5y-a1-m2-cA_7f5y-a1-m2-cB
77 3eiv-a2-m1-cA 98 73 0.2472 0.2245 0.3014 0.006 3eiv-a2-m1-cA_3eiv-a2-m1-cB
78 3eiv-a1-m1-cA 98 73 0.2472 0.2245 0.3014 0.006 3eiv-a1-m1-cA_3eiv-a1-m1-cD
79 1x3e-a1-m2-cA 110 74 0.2697 0.2182 0.3243 0.007 1x3e-a1-m1-cA_1x3e-a1-m2-cA, 1x3e-a1-m2-cA_1x3e-a1-m2-cB
80 1x3e-a1-m1-cA 110 74 0.2697 0.2182 0.3243 0.007 1x3e-a1-m1-cA_1x3e-a1-m2-cA
81 3a5u-a1-m2-cB 112 81 0.2809 0.2232 0.3086 0.007 3a5u-a1-m2-cB_3a5u-a1-m2-cA
82 7f5z-a1-m2-cA 117 84 0.2809 0.2137 0.2976 0.011 7f5z-a1-m2-cA_7f5z-a1-m2-cB
83 7f5z-a1-m2-cB 118 84 0.2809 0.2119 0.2976 0.011 7f5z-a1-m1-cB_7f5z-a1-m2-cB, 7f5z-a1-m2-cA_7f5z-a1-m2-cB
84 7f5z-a1-m1-cB 118 84 0.2809 0.2119 0.2976 0.011 7f5z-a1-m1-cB_7f5z-a1-m2-cB
85 3eiv-a2-m1-cB 111 71 0.2584 0.2072 0.3239 0.015 3eiv-a2-m1-cA_3eiv-a2-m1-cB
86 3a5u-a1-m2-cA 118 86 0.2921 0.2203 0.3023 0.021 3a5u-a1-m1-cA_3a5u-a1-m2-cA, 3a5u-a1-m2-cB_3a5u-a1-m2-cA
87 3a5u-a1-m1-cA 118 86 0.2921 0.2203 0.3023 0.021 3a5u-a1-m1-cA_3a5u-a1-m2-cA
88 1x3e-a1-m2-cB 119 80 0.2809 0.2101 0.3125 0.027 1x3e-a1-m2-cA_1x3e-a1-m2-cB
89 3eiv-a3-m1-cD 100 70 0.2472 0.2200 0.3143 0.028 3eiv-a3-m1-cD_3eiv-a3-m1-cC
90 3eiv-a1-m1-cD 100 70 0.2472 0.2200 0.3143 0.028 3eiv-a1-m1-cA_3eiv-a1-m1-cD
91 3eiv-a3-m1-cC 111 84 0.2809 0.2252 0.2976 0.059 3eiv-a3-m1-cD_3eiv-a3-m1-cC
92 4dam-a2-m1-cG 98 69 0.2472 0.2245 0.3188 0.59 4dam-a2-m1-cG_4dam-a2-m1-cH
93 4is3-a1-m1-cD 240 31 0.1348 0.0500 0.3871 2.2 4is3-a1-m1-cA_4is3-a1-m1-cD, 4is3-a1-m1-cD_4is3-a1-m1-cC
94 4is3-a1-m1-cA 240 31 0.1348 0.0500 0.3871 2.2 4is3-a1-m1-cA_4is3-a1-m1-cD
95 4is3-a1-m1-cC 241 31 0.1348 0.0498 0.3871 2.2 4is3-a1-m1-cD_4is3-a1-m1-cC
96 4dam-a3-m1-cL 100 71 0.2247 0.2000 0.2817 3.2 4dam-a3-m1-cL_4dam-a3-m1-cI
97 4dam-a3-m1-cI 110 38 0.1461 0.1182 0.3421 8.6 4dam-a3-m1-cL_4dam-a3-m1-cI
98 4dam-a2-m1-cF 110 38 0.1461 0.1182 0.3421 8.6 4dam-a2-m1-cF_4dam-a2-m1-cE
99 4dam-a2-m1-cE 112 38 0.1461 0.1161 0.3421 8.9 4dam-a2-m1-cF_4dam-a2-m1-cE
100 4dam-a2-m1-cH 108 38 0.1461 0.1204 0.3421 9.1 4dam-a2-m1-cG_4dam-a2-m1-cH

[Back]
Reference:
Jacob Schwartz et al.

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