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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
HRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEA
YLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4jjn-a1-m1-cE 96 94 1.0000 0.9792 1.0000 9.38e-64 4jjn-a1-m1-cE_4jjn-a1-m1-cA
2 7z0o-a1-m1-cA 94 94 1.0000 1.0000 1.0000 9.41e-64 7z0o-a1-m1-cA_7z0o-a1-m1-cC
3 7z0o-a1-m1-cC 97 94 1.0000 0.9691 1.0000 1.15e-63 7z0o-a1-m1-cA_7z0o-a1-m1-cC
4 4jjn-a1-m1-cA 98 94 1.0000 0.9592 1.0000 1.22e-63 4jjn-a1-m1-cE_4jjn-a1-m1-cA
5 8f86-a1-m1-cA 107 94 0.8830 0.7757 0.8830 7.45e-57 8f86-a1-m1-cE_8f86-a1-m1-cA
6 8f86-a1-m1-cE 95 93 0.8723 0.8632 0.8817 1.15e-55 8f86-a1-m1-cE_8f86-a1-m1-cA
7 5ay8-a1-m1-cE 96 93 0.7766 0.7604 0.7849 5.38e-50 5ay8-a1-m1-cE_5ay8-a1-m1-cA
8 5ay8-a1-m1-cA 97 93 0.7766 0.7526 0.7849 6.19e-50 5ay8-a1-m1-cE_5ay8-a1-m1-cA
9 5zbx-a1-m1-cA 95 94 0.7447 0.7368 0.7447 2.91e-45 5zbx-a1-m1-cA_5zbx-a1-m1-cE
10 5zbx-a1-m1-cE 101 96 0.7340 0.6832 0.7188 3.98e-44 5zbx-a1-m1-cA_5zbx-a1-m1-cE
11 6kxv-a1-m1-cA 94 93 0.7128 0.7128 0.7204 1.31e-43 6kxv-a1-m1-cA_6kxv-a1-m1-cE
12 6kxv-a1-m1-cE 95 93 0.7128 0.7053 0.7204 1.65e-43 6kxv-a1-m1-cA_6kxv-a1-m1-cE
13 7y7i-a1-m1-cE 97 96 0.6489 0.6289 0.6354 5.60e-38 7y7i-a1-m1-cE_7y7i-a1-m1-cA
14 7y7i-a1-m1-cA 102 96 0.6489 0.5980 0.6354 1.01e-37 7y7i-a1-m1-cE_7y7i-a1-m1-cA
15 6uph-a1-m1-cE 97 93 0.6170 0.5979 0.6237 4.07e-36 6uph-a1-m1-cA_6uph-a1-m1-cE
16 6uph-a1-m1-cA 93 90 0.6064 0.6129 0.6333 7.62e-35 6uph-a1-m1-cA_6uph-a1-m1-cE
17 2yfw-a2-m1-cE 88 86 0.5745 0.6136 0.6279 8.02e-33 2yfw-a2-m1-cC_2yfw-a2-m1-cE
18 7d69-a1-m1-cE 99 91 0.5745 0.5455 0.5934 1.99e-32 7d69-a1-m1-cA_7d69-a1-m1-cE
19 7d69-a1-m1-cA 90 83 0.5319 0.5556 0.6024 2.82e-29 7d69-a1-m1-cA_7d69-a1-m1-cE
20 2yfw-a2-m1-cC 71 76 0.5000 0.6620 0.6184 1.31e-25 2yfw-a2-m1-cC_2yfw-a2-m1-cE
21 6xwt-a1-m1-cC 74 68 0.3085 0.3919 0.4265 2.20e-10 6xwt-a1-m1-cA_6xwt-a1-m1-cC
22 6xwt-a1-m1-cA 74 68 0.3085 0.3919 0.4265 2.20e-10 6xwt-a1-m1-cA_6xwt-a1-m1-cC
23 7lv9-a1-m1-cE 102 79 0.2660 0.2451 0.3165 3.96e-05 7lv9-a1-m1-cA_7lv9-a1-m1-cE
24 7lv9-a1-m1-cA 102 79 0.2660 0.2451 0.3165 3.96e-05 7lv9-a1-m1-cA_7lv9-a1-m1-cE
25 1ku5-a1-m1-cB 66 62 0.2128 0.3030 0.3226 0.24 1ku5-a1-m1-cA_1ku5-a1-m1-cB
26 1ku5-a1-m1-cA 66 62 0.2128 0.3030 0.3226 0.24 1ku5-a1-m1-cA_1ku5-a1-m1-cB
27 1taf-a2-m5-cA 68 44 0.1383 0.1912 0.2955 0.46 1taf-a2-m4-cA_1taf-a2-m5-cA
28 1taf-a2-m4-cA 68 44 0.1383 0.1912 0.2955 0.46 1taf-a2-m4-cA_1taf-a2-m5-cA
29 7da0-a1-m2-cB 95 76 0.2766 0.2737 0.3421 0.47 7da0-a1-m1-cB_7da0-a1-m2-cB
30 7da0-a1-m1-cB 95 76 0.2766 0.2737 0.3421 0.47 7da0-a1-m1-cB_7da0-a1-m2-cB
31 3g1u-a1-m1-cB 412 36 0.1702 0.0388 0.4444 4.3 3g1u-a1-m1-cB_3g1u-a1-m1-cD
32 3g1u-a1-m1-cA 412 36 0.1702 0.0388 0.4444 4.3 3g1u-a1-m1-cA_3g1u-a1-m1-cD
33 3g1u-a1-m1-cD 418 36 0.1702 0.0383 0.4444 4.3 3g1u-a1-m1-cA_3g1u-a1-m1-cD, 3g1u-a1-m1-cB_3g1u-a1-m1-cD, 3g1u-a1-m1-cD_3g1u-a1-m1-cC
34 3g1u-a1-m1-cC 424 36 0.1702 0.0377 0.4444 4.3 3g1u-a1-m1-cD_3g1u-a1-m1-cC
35 1b67-a1-m1-cB 65 18 0.1064 0.1538 0.5556 6.4 1b67-a1-m1-cB_1b67-a1-m1-cA
36 1b67-a1-m1-cA 68 20 0.1170 0.1618 0.5500 6.5 1b67-a1-m1-cB_1b67-a1-m1-cA
37 1wsr-a2-m2-cB 371 26 0.1170 0.0296 0.4231 6.6 1wsr-a2-m1-cA_1wsr-a2-m2-cB
38 1wsr-a2-m1-cA 371 26 0.1170 0.0296 0.4231 6.6 1wsr-a2-m1-cA_1wsr-a2-m2-cB
39 1wsr-a1-m1-cB 371 26 0.1170 0.0296 0.4231 6.6 1wsr-a1-m1-cA_1wsr-a1-m1-cB
40 1wsr-a1-m1-cA 371 26 0.1170 0.0296 0.4231 6.6 1wsr-a1-m1-cA_1wsr-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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