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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
HRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEA
YLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGER

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4jjn-a1-m1-cE 96 96 1.0000 1.0000 1.0000 4.08e-65 4jjn-a1-m1-cE_4jjn-a1-m1-cA
2 4jjn-a1-m1-cA 98 96 1.0000 0.9796 1.0000 4.64e-65 4jjn-a1-m1-cE_4jjn-a1-m1-cA
3 7z0o-a1-m1-cC 97 95 0.9896 0.9794 1.0000 2.05e-64 7z0o-a1-m1-cA_7z0o-a1-m1-cC
4 7z0o-a1-m1-cA 94 94 0.9792 1.0000 1.0000 9.58e-64 7z0o-a1-m1-cA_7z0o-a1-m1-cC
5 8f86-a1-m1-cA 107 96 0.8854 0.7944 0.8854 2.55e-58 8f86-a1-m1-cE_8f86-a1-m1-cA
6 8f86-a1-m1-cE 95 95 0.8750 0.8842 0.8842 4.67e-57 8f86-a1-m1-cE_8f86-a1-m1-cA
7 5ay8-a1-m1-cE 96 95 0.7708 0.7708 0.7789 2.89e-50 5ay8-a1-m1-cE_5ay8-a1-m1-cA
8 5ay8-a1-m1-cA 97 95 0.7708 0.7629 0.7789 4.28e-50 5ay8-a1-m1-cE_5ay8-a1-m1-cA
9 5zbx-a1-m1-cA 95 95 0.7396 0.7474 0.7474 5.33e-46 5zbx-a1-m1-cA_5zbx-a1-m1-cE
10 6kxv-a1-m1-cE 95 95 0.7188 0.7263 0.7263 4.68e-45 6kxv-a1-m1-cA_6kxv-a1-m1-cE
11 5zbx-a1-m1-cE 101 97 0.7292 0.6931 0.7216 8.06e-45 5zbx-a1-m1-cA_5zbx-a1-m1-cE
12 6kxv-a1-m1-cA 94 94 0.7083 0.7234 0.7234 1.89e-44 6kxv-a1-m1-cA_6kxv-a1-m1-cE
13 7y7i-a1-m1-cE 97 96 0.6354 0.6289 0.6354 7.07e-38 7y7i-a1-m1-cE_7y7i-a1-m1-cA
14 7y7i-a1-m1-cA 102 96 0.6354 0.5980 0.6354 1.13e-37 7y7i-a1-m1-cE_7y7i-a1-m1-cA
15 6uph-a1-m1-cE 97 94 0.6042 0.5979 0.6170 2.44e-36 6uph-a1-m1-cA_6uph-a1-m1-cE
16 6uph-a1-m1-cA 93 91 0.5938 0.6129 0.6264 4.32e-35 6uph-a1-m1-cA_6uph-a1-m1-cE
17 2yfw-a2-m1-cE 88 87 0.5625 0.6136 0.6207 5.01e-33 2yfw-a2-m1-cC_2yfw-a2-m1-cE
18 7d69-a1-m1-cE 99 95 0.5833 0.5657 0.5895 1.93e-32 7d69-a1-m1-cA_7d69-a1-m1-cE
19 7d69-a1-m1-cA 90 87 0.5417 0.5778 0.5977 2.31e-29 7d69-a1-m1-cA_7d69-a1-m1-cE
20 2yfw-a2-m1-cC 71 76 0.4896 0.6620 0.6184 1.27e-25 2yfw-a2-m1-cC_2yfw-a2-m1-cE
21 6xwt-a1-m1-cC 74 68 0.3021 0.3919 0.4265 2.71e-10 6xwt-a1-m1-cA_6xwt-a1-m1-cC
22 6xwt-a1-m1-cA 74 68 0.3021 0.3919 0.4265 2.71e-10 6xwt-a1-m1-cA_6xwt-a1-m1-cC
23 7lv9-a1-m1-cE 102 79 0.2604 0.2451 0.3165 4.57e-05 7lv9-a1-m1-cA_7lv9-a1-m1-cE
24 7lv9-a1-m1-cA 102 79 0.2604 0.2451 0.3165 4.57e-05 7lv9-a1-m1-cA_7lv9-a1-m1-cE
25 1ku5-a1-m1-cB 66 62 0.2083 0.3030 0.3226 0.28 1ku5-a1-m1-cA_1ku5-a1-m1-cB
26 1ku5-a1-m1-cA 66 62 0.2083 0.3030 0.3226 0.28 1ku5-a1-m1-cA_1ku5-a1-m1-cB
27 1taf-a2-m5-cA 68 44 0.1354 0.1912 0.2955 0.51 1taf-a2-m4-cA_1taf-a2-m5-cA
28 1taf-a2-m4-cA 68 44 0.1354 0.1912 0.2955 0.51 1taf-a2-m4-cA_1taf-a2-m5-cA
29 7da0-a1-m2-cB 95 76 0.2708 0.2737 0.3421 0.52 7da0-a1-m1-cB_7da0-a1-m2-cB
30 7da0-a1-m1-cB 95 76 0.2708 0.2737 0.3421 0.52 7da0-a1-m1-cB_7da0-a1-m2-cB
31 3g1u-a1-m1-cB 412 36 0.1667 0.0388 0.4444 4.5 3g1u-a1-m1-cB_3g1u-a1-m1-cD
32 3g1u-a1-m1-cA 412 36 0.1667 0.0388 0.4444 4.5 3g1u-a1-m1-cA_3g1u-a1-m1-cD
33 3g1u-a1-m1-cD 418 36 0.1667 0.0383 0.4444 4.5 3g1u-a1-m1-cA_3g1u-a1-m1-cD, 3g1u-a1-m1-cB_3g1u-a1-m1-cD, 3g1u-a1-m1-cD_3g1u-a1-m1-cC
34 3g1u-a1-m1-cC 424 36 0.1667 0.0377 0.4444 4.5 3g1u-a1-m1-cD_3g1u-a1-m1-cC
35 1wsr-a2-m2-cB 371 26 0.1146 0.0296 0.4231 6.9 1wsr-a2-m1-cA_1wsr-a2-m2-cB
36 1wsr-a2-m1-cA 371 26 0.1146 0.0296 0.4231 6.9 1wsr-a2-m1-cA_1wsr-a2-m2-cB
37 1wsr-a1-m1-cB 371 26 0.1146 0.0296 0.4231 6.9 1wsr-a1-m1-cA_1wsr-a1-m1-cB
38 1wsr-a1-m1-cA 371 26 0.1146 0.0296 0.4231 6.9 1wsr-a1-m1-cA_1wsr-a1-m1-cB
39 1b67-a1-m1-cB 65 18 0.1042 0.1538 0.5556 7.1 1b67-a1-m1-cB_1b67-a1-m1-cA
40 1b67-a1-m1-cA 68 20 0.1146 0.1618 0.5500 7.3 1b67-a1-m1-cB_1b67-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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