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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
HVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQL
NMYGFRKVVHIEDTEFQHPCFLRGQEQLLENIKR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5hdg-a2-m2-cA 94 94 1.0000 1.0000 1.0000 7.26e-69 5hdg-a2-m1-cA_5hdg-a2-m2-cA
2 5hdg-a2-m1-cA 94 94 1.0000 1.0000 1.0000 7.26e-69 5hdg-a2-m1-cA_5hdg-a2-m2-cA
3 5d5u-a1-m2-cB 100 97 0.9894 0.9300 0.9588 5.12e-66 5d5u-a1-m1-cB_5d5u-a1-m2-cB
4 5d5u-a1-m1-cB 100 97 0.9894 0.9300 0.9588 5.12e-66 5d5u-a1-m1-cB_5d5u-a1-m2-cB
5 7dcs-a2-m1-cE 105 103 0.9894 0.8857 0.9029 1.15e-64 7dcs-a2-m1-cF_7dcs-a2-m1-cE
6 7dcs-a2-m1-cF 93 93 0.9681 0.9785 0.9785 1.66e-64 7dcs-a2-m1-cF_7dcs-a2-m1-cE
7 6j6w-a1-m2-cB 94 94 0.7553 0.7553 0.7553 6.39e-48 6j6w-a1-m1-cA_6j6w-a1-m2-cB, 6j6w-a1-m2-cA_6j6w-a1-m2-cB
8 6j6w-a1-m2-cA 94 94 0.7553 0.7553 0.7553 6.39e-48 6j6w-a1-m2-cA_6j6w-a1-m2-cB
9 6j6w-a1-m1-cA 94 94 0.7553 0.7553 0.7553 6.39e-48 6j6w-a1-m1-cA_6j6w-a1-m2-cB
10 5d8l-a2-m1-cF 98 96 0.7234 0.6939 0.7083 7.82e-46 5d8l-a2-m1-cF_5d8l-a2-m1-cH
11 7dcu-a1-m1-cB 102 99 0.7128 0.6569 0.6768 8.27e-44 7dcu-a1-m1-cC_7dcu-a1-m1-cB
12 5d8l-a2-m1-cH 106 104 0.7128 0.6321 0.6442 9.44e-44 5d8l-a2-m1-cF_5d8l-a2-m1-cH
13 7dcu-a1-m1-cC 92 93 0.6915 0.7065 0.6989 1.80e-42 7dcu-a1-m1-cC_7dcu-a1-m1-cB
14 5d5x-a1-m1-cB 99 96 0.4468 0.4242 0.4375 1.61e-23 5d5x-a1-m1-cE_5d5x-a1-m1-cB
15 3hts-a1-m2-cB 82 66 0.4149 0.4756 0.5909 1.83e-23 3hts-a1-m1-cB_3hts-a1-m2-cB
16 3hts-a1-m1-cB 82 66 0.4149 0.4756 0.5909 1.83e-23 3hts-a1-m1-cB_3hts-a1-m2-cB
17 5d5x-a1-m1-cE 98 95 0.4468 0.4286 0.4421 5.52e-23 5d5x-a1-m1-cE_5d5x-a1-m1-cB
18 1fbs-a1-m1-cB 90 66 0.4043 0.4222 0.5758 2.69e-22 1fbs-a1-m1-cA_1fbs-a1-m1-cB
19 1fbs-a1-m1-cA 87 66 0.4043 0.4368 0.5758 2.80e-22 1fbs-a1-m1-cA_1fbs-a1-m1-cB
20 6lsu-a2-m2-cA 676 36 0.1383 0.0192 0.3611 3.5 6lsu-a2-m1-cA_6lsu-a2-m2-cA
21 6lsu-a2-m1-cA 676 36 0.1383 0.0192 0.3611 3.5 6lsu-a2-m1-cA_6lsu-a2-m2-cA
22 5f5m-a1-m3-cA 341 53 0.1489 0.0411 0.2642 7.2 5f5m-a1-m3-cB_5f5m-a1-m3-cA
23 5f5m-a1-m2-cA 341 53 0.1489 0.0411 0.2642 7.2 5f5m-a1-m3-cB_5f5m-a1-m2-cA
24 5f5m-a1-m1-cA 341 53 0.1489 0.0411 0.2642 7.2 5f5m-a1-m3-cB_5f5m-a1-m1-cA
25 5yz0-a1-m1-cB 2362 34 0.1383 0.0055 0.3824 7.6 5yz0-a1-m1-cA_5yz0-a1-m1-cB
26 5yz0-a1-m1-cA 2362 34 0.1383 0.0055 0.3824 7.6 5yz0-a1-m1-cA_5yz0-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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