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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
ILELVPLSPTSFVTKYLGTFGGTLVSQSLLASLHTVPLNFFPTSLHSYFIKGGDPRTKIT
YHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFAVQR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1tbu-a1-m1-cD 97 97 1.0000 1.0000 1.0000 2.07e-67 1tbu-a1-m1-cC_1tbu-a1-m1-cD
2 1tbu-a1-m1-cB 98 97 1.0000 0.9898 1.0000 2.21e-67 1tbu-a1-m1-cC_1tbu-a1-m1-cB
3 1tbu-a1-m1-cC 96 96 0.9794 0.9896 0.9896 3.38e-65 1tbu-a1-m1-cA_1tbu-a1-m1-cC, 1tbu-a1-m1-cC_1tbu-a1-m1-cB, 1tbu-a1-m1-cC_1tbu-a1-m1-cD
4 1tbu-a1-m1-cA 96 95 0.9691 0.9792 0.9895 2.33e-64 1tbu-a1-m1-cA_1tbu-a1-m1-cC
5 1c8u-a1-m1-cB 285 68 0.3093 0.1053 0.4412 1.17e-12 1c8u-a1-m1-cA_1c8u-a1-m1-cB
6 1c8u-a1-m1-cA 285 68 0.3093 0.1053 0.4412 1.17e-12 1c8u-a1-m1-cA_1c8u-a1-m1-cB
7 4r9z-a1-m1-cA 245 77 0.2990 0.1184 0.3766 1.48e-12 4r9z-a1-m1-cA_4r9z-a1-m1-cB
8 4qfw-a1-m1-cB 265 78 0.3299 0.1208 0.4103 2.95e-12 4qfw-a1-m1-cD_4qfw-a1-m1-cB
9 4qfw-a3-m1-cD 263 78 0.3299 0.1217 0.4103 2.97e-12 4qfw-a3-m1-cD_4qfw-a3-m1-cC
10 4qfw-a1-m1-cD 263 78 0.3299 0.1217 0.4103 2.97e-12 4qfw-a1-m1-cD_4qfw-a1-m1-cB
11 4qfw-a3-m1-cC 269 78 0.3299 0.1190 0.4103 3.32e-12 4qfw-a3-m1-cD_4qfw-a3-m1-cC
12 4r9z-a1-m1-cB 248 76 0.2887 0.1129 0.3684 9.56e-12 4r9z-a1-m1-cA_4r9z-a1-m1-cB
13 3u0a-a3-m3-cB 252 89 0.3402 0.1310 0.3708 1.04e-11 3u0a-a3-m3-cB_3u0a-a3-m1-cA, 3u0a-a3-m3-cB_3u0a-a3-m3-cA
14 3u0a-a2-m2-cB 252 89 0.3402 0.1310 0.3708 1.04e-11 3u0a-a2-m2-cB_3u0a-a2-m1-cA
15 3u0a-a3-m3-cA 256 70 0.2680 0.1016 0.3714 1.38e-11 3u0a-a3-m1-cA_3u0a-a3-m3-cA, 3u0a-a3-m3-cB_3u0a-a3-m3-cA
16 3u0a-a3-m1-cA 256 70 0.2680 0.1016 0.3714 1.38e-11 3u0a-a3-m1-cA_3u0a-a3-m3-cA, 3u0a-a3-m3-cB_3u0a-a3-m1-cA
17 3u0a-a2-m1-cA 256 70 0.2680 0.1016 0.3714 1.38e-11 3u0a-a2-m2-cB_3u0a-a2-m1-cA
18 3rd7-a1-m1-cB 276 100 0.2990 0.1051 0.2900 1.17e-07 3rd7-a1-m1-cA_3rd7-a1-m1-cB
19 3rd7-a1-m1-cA 275 100 0.2990 0.1055 0.2900 1.25e-07 3rd7-a1-m1-cA_3rd7-a1-m1-cB
20 1y6z-a1-m1-cB 246 69 0.1856 0.0732 0.2609 2.3 1y6z-a1-m1-cA_1y6z-a1-m1-cB
21 1y6z-a1-m1-cA 242 69 0.1856 0.0744 0.2609 2.6 1y6z-a1-m1-cA_1y6z-a1-m1-cB
22 7q5p-a1-m1-cC 627 36 0.1340 0.0207 0.3611 6.4 7q5p-a1-m1-cB_7q5p-a1-m1-cC
23 7q5p-a1-m1-cB 627 36 0.1340 0.0207 0.3611 6.4 7q5p-a1-m1-cB_7q5p-a1-m1-cC
24 6giw-a1-m1-cB 155 30 0.1031 0.0645 0.3333 6.7 6giw-a1-m1-cB_6giw-a1-m1-cC
25 6giw-a1-m1-cC 157 30 0.1031 0.0637 0.3333 8.1 6giw-a1-m1-cB_6giw-a1-m1-cC
26 2dre-a1-m1-cD 177 30 0.1031 0.0565 0.3333 8.8 2dre-a1-m1-cC_2dre-a1-m1-cD
27 2dre-a1-m1-cC 177 30 0.1031 0.0565 0.3333 8.8 2dre-a1-m1-cC_2dre-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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