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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
ILELVPLSPTSFVTKYLPTFGGTLVSQSLLASLHTVPLNFFPTSLHSYFIKGGDPRTKIT
YHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFAVQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1tbu-a1-m1-cC 96 96 1.0000 1.0000 1.0000 1.99e-66 1tbu-a1-m1-cA_1tbu-a1-m1-cC, 1tbu-a1-m1-cC_1tbu-a1-m1-cB, 1tbu-a1-m1-cC_1tbu-a1-m1-cD
2 1tbu-a1-m1-cA 96 95 0.9896 0.9896 1.0000 1.30e-65 1tbu-a1-m1-cA_1tbu-a1-m1-cC
3 1tbu-a1-m1-cD 97 96 0.9896 0.9794 0.9896 3.35e-65 1tbu-a1-m1-cC_1tbu-a1-m1-cD
4 1tbu-a1-m1-cB 98 96 0.9896 0.9694 0.9896 3.38e-65 1tbu-a1-m1-cC_1tbu-a1-m1-cB
5 4r9z-a1-m1-cA 245 100 0.3750 0.1469 0.3600 5.53e-14 4r9z-a1-m1-cA_4r9z-a1-m1-cB
6 4r9z-a1-m1-cB 248 99 0.3646 0.1411 0.3535 3.42e-13 4r9z-a1-m1-cA_4r9z-a1-m1-cB
7 1c8u-a1-m1-cB 285 68 0.3125 0.1053 0.4412 9.32e-13 1c8u-a1-m1-cA_1c8u-a1-m1-cB
8 1c8u-a1-m1-cA 285 68 0.3125 0.1053 0.4412 9.32e-13 1c8u-a1-m1-cA_1c8u-a1-m1-cB
9 4qfw-a3-m1-cD 263 77 0.3333 0.1217 0.4156 2.98e-12 4qfw-a3-m1-cD_4qfw-a3-m1-cC
10 4qfw-a1-m1-cD 263 77 0.3333 0.1217 0.4156 2.98e-12 4qfw-a1-m1-cD_4qfw-a1-m1-cB
11 4qfw-a1-m1-cB 265 77 0.3333 0.1208 0.4156 3.45e-12 4qfw-a1-m1-cD_4qfw-a1-m1-cB
12 4qfw-a3-m1-cC 269 77 0.3333 0.1190 0.4156 3.47e-12 4qfw-a3-m1-cD_4qfw-a3-m1-cC
13 3u0a-a3-m3-cA 256 70 0.2708 0.1016 0.3714 1.05e-11 3u0a-a3-m1-cA_3u0a-a3-m3-cA, 3u0a-a3-m3-cB_3u0a-a3-m3-cA
14 3u0a-a3-m1-cA 256 70 0.2708 0.1016 0.3714 1.05e-11 3u0a-a3-m1-cA_3u0a-a3-m3-cA, 3u0a-a3-m3-cB_3u0a-a3-m1-cA
15 3u0a-a2-m1-cA 256 70 0.2708 0.1016 0.3714 1.05e-11 3u0a-a2-m2-cB_3u0a-a2-m1-cA
16 3u0a-a3-m3-cB 252 70 0.2708 0.1032 0.3714 1.05e-11 3u0a-a3-m3-cB_3u0a-a3-m1-cA, 3u0a-a3-m3-cB_3u0a-a3-m3-cA
17 3u0a-a2-m2-cB 252 70 0.2708 0.1032 0.3714 1.05e-11 3u0a-a2-m2-cB_3u0a-a2-m1-cA
18 3rd7-a1-m1-cB 276 76 0.2500 0.0870 0.3158 7.94e-08 3rd7-a1-m1-cA_3rd7-a1-m1-cB
19 3rd7-a1-m1-cA 275 76 0.2500 0.0873 0.3158 8.08e-08 3rd7-a1-m1-cA_3rd7-a1-m1-cB
20 1y6z-a1-m1-cB 246 69 0.1875 0.0732 0.2609 3.8 1y6z-a1-m1-cA_1y6z-a1-m1-cB
21 1y6z-a1-m1-cA 242 69 0.1875 0.0744 0.2609 4.2 1y6z-a1-m1-cA_1y6z-a1-m1-cB
22 6giw-a1-m1-cB 155 30 0.1042 0.0645 0.3333 5.3 6giw-a1-m1-cB_6giw-a1-m1-cC
23 6giw-a1-m1-cC 157 30 0.1042 0.0637 0.3333 6.2 6giw-a1-m1-cB_6giw-a1-m1-cC
24 7q5p-a1-m1-cC 627 36 0.1354 0.0207 0.3611 6.3 7q5p-a1-m1-cB_7q5p-a1-m1-cC
25 7q5p-a1-m1-cB 627 36 0.1354 0.0207 0.3611 6.3 7q5p-a1-m1-cB_7q5p-a1-m1-cC
26 2dre-a1-m1-cD 177 30 0.1042 0.0565 0.3333 7.0 2dre-a1-m1-cC_2dre-a1-m1-cD
27 2dre-a1-m1-cC 177 30 0.1042 0.0565 0.3333 7.0 2dre-a1-m1-cC_2dre-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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