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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
ITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGGTLLEAEDLDELEAVKAAHEA
VLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1lxn-a6-m2-cC 96 96 1.0000 1.0000 1.0000 1.10e-63 1lxn-a6-m2-cB_1lxn-a6-m2-cC
2 1lxn-a6-m2-cB 96 96 1.0000 1.0000 1.0000 1.10e-63 1lxn-a6-m1-cA_1lxn-a6-m2-cB, 1lxn-a6-m2-cB_1lxn-a6-m2-cC
3 1lxn-a6-m1-cA 96 96 1.0000 1.0000 1.0000 1.10e-63 1lxn-a6-m1-cA_1lxn-a6-m2-cB
4 1lxn-a5-m1-cD 96 96 1.0000 1.0000 1.0000 1.10e-63 1lxn-a5-m1-cB_1lxn-a5-m1-cD, 1lxn-a5-m1-cC_1lxn-a5-m1-cD
5 1lxn-a5-m1-cC 96 96 1.0000 1.0000 1.0000 1.10e-63 1lxn-a5-m1-cC_1lxn-a5-m1-cD
6 1lxn-a5-m1-cB 96 96 1.0000 1.0000 1.0000 1.10e-63 1lxn-a5-m1-cB_1lxn-a5-m1-cD
7 2eky-a1-m1-cB 100 96 0.4271 0.4100 0.4271 2.59e-15 2eky-a1-m1-cC_2eky-a1-m1-cB
8 2eky-a2-m1-cE 98 96 0.4271 0.4184 0.4271 2.60e-15 2eky-a2-m1-cG_2eky-a2-m1-cE
9 2eky-a2-m1-cH 96 96 0.4271 0.4271 0.4271 2.79e-15 2eky-a2-m1-cG_2eky-a2-m1-cH
10 2eky-a2-m1-cG 96 96 0.4271 0.4271 0.4271 2.79e-15 2eky-a2-m1-cG_2eky-a2-m1-cE, 2eky-a2-m1-cG_2eky-a2-m1-cH
11 2eky-a1-m1-cC 99 96 0.4271 0.4141 0.4271 2.91e-15 2eky-a1-m1-cC_2eky-a1-m1-cB
12 1yqh-a1-m2-cB 98 85 0.2917 0.2857 0.3294 6.23e-06 1yqh-a1-m1-cB_1yqh-a1-m2-cB, 1yqh-a1-m2-cB_1yqh-a1-m2-cA
13 1yqh-a1-m1-cB 98 85 0.2917 0.2857 0.3294 6.23e-06 1yqh-a1-m1-cB_1yqh-a1-m2-cB
14 1yqh-a1-m2-cA 101 85 0.2917 0.2772 0.3294 7.24e-06 1yqh-a1-m2-cB_1yqh-a1-m2-cA
15 1lxj-a1-m4-cA 101 90 0.2708 0.2574 0.2889 8.86e-06 1lxj-a1-m1-cA_1lxj-a1-m4-cA, 1lxj-a1-m2-cA_1lxj-a1-m4-cA, 1lxj-a1-m3-cA_1lxj-a1-m4-cA
16 1lxj-a1-m3-cA 101 90 0.2708 0.2574 0.2889 8.86e-06 1lxj-a1-m3-cA_1lxj-a1-m4-cA
17 1lxj-a1-m2-cA 101 90 0.2708 0.2574 0.2889 8.86e-06 1lxj-a1-m2-cA_1lxj-a1-m4-cA
18 1lxj-a1-m1-cA 101 90 0.2708 0.2574 0.2889 8.86e-06 1lxj-a1-m1-cA_1lxj-a1-m4-cA
19 3g0o-a2-m4-cA 273 63 0.2292 0.0806 0.3492 4.3 3g0o-a2-m2-cA_3g0o-a2-m4-cA, 3g0o-a2-m3-cA_3g0o-a2-m4-cA
20 3g0o-a2-m3-cA 273 63 0.2292 0.0806 0.3492 4.3 3g0o-a2-m3-cA_3g0o-a2-m4-cA
21 3g0o-a2-m2-cA 273 63 0.2292 0.0806 0.3492 4.3 3g0o-a2-m2-cA_3g0o-a2-m4-cA
22 5bqs-a1-m1-cB 323 73 0.2083 0.0619 0.2740 4.8 5bqs-a1-m1-cA_5bqs-a1-m1-cB
23 5bqs-a1-m1-cA 323 73 0.2083 0.0619 0.2740 4.8 5bqs-a1-m1-cA_5bqs-a1-m1-cB
24 5li7-a1-m1-cA 373 53 0.1771 0.0456 0.3208 6.3 5li7-a1-m1-cB_5li7-a1-m1-cA
25 5li7-a1-m1-cB 372 53 0.1771 0.0457 0.3208 6.5 5li7-a1-m1-cB_5li7-a1-m1-cA
26 3grl-a2-m2-cA 601 25 0.1146 0.0183 0.4400 6.7 3grl-a2-m1-cA_3grl-a2-m2-cA
27 3grl-a2-m1-cA 601 25 0.1146 0.0183 0.4400 6.7 3grl-a2-m1-cA_3grl-a2-m2-cA
28 3gq2-a1-m1-cB 614 25 0.1146 0.0179 0.4400 6.8 3gq2-a1-m1-cA_3gq2-a1-m1-cB
29 3gq2-a1-m1-cA 614 25 0.1146 0.0179 0.4400 7.0 3gq2-a1-m1-cA_3gq2-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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