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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
KASIALQVLPLVQGIDRIAVIDQVIAYLQTQEVTVVTPFETVLEGEFDELRILKEALEVA
GQEADNVFANVKINVGEILSIDEKLEK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ibo-a1-m1-cD 87 87 1.0000 1.0000 1.0000 5.39e-56 2ibo-a1-m1-cA_2ibo-a1-m1-cD, 2ibo-a1-m1-cB_2ibo-a1-m1-cD, 2ibo-a1-m1-cC_2ibo-a1-m1-cD
2 2ibo-a1-m1-cC 87 87 1.0000 1.0000 1.0000 5.39e-56 2ibo-a1-m1-cC_2ibo-a1-m1-cD
3 2ibo-a1-m1-cB 87 87 1.0000 1.0000 1.0000 5.39e-56 2ibo-a1-m1-cB_2ibo-a1-m1-cD
4 2ibo-a1-m1-cA 87 87 1.0000 1.0000 1.0000 5.39e-56 2ibo-a1-m1-cA_2ibo-a1-m1-cD
5 1vk8-a1-m1-cD 91 55 0.2069 0.1978 0.3273 0.013 1vk8-a1-m1-cA_1vk8-a1-m1-cD, 1vk8-a1-m1-cB_1vk8-a1-m1-cD, 1vk8-a1-m1-cC_1vk8-a1-m1-cD
6 1vk8-a1-m1-cC 91 55 0.2069 0.1978 0.3273 0.013 1vk8-a1-m1-cC_1vk8-a1-m1-cD
7 1vk8-a1-m1-cB 91 55 0.2069 0.1978 0.3273 0.013 1vk8-a1-m1-cB_1vk8-a1-m1-cD
8 1vk8-a1-m1-cA 91 55 0.2069 0.1978 0.3273 0.013 1vk8-a1-m1-cA_1vk8-a1-m1-cD
9 1yqh-a1-m2-cA 101 89 0.3333 0.2871 0.3258 0.047 1yqh-a1-m2-cB_1yqh-a1-m2-cA
10 1yqh-a1-m2-cB 98 89 0.3333 0.2959 0.3258 0.054 1yqh-a1-m1-cB_1yqh-a1-m2-cB, 1yqh-a1-m2-cB_1yqh-a1-m2-cA
11 1yqh-a1-m1-cB 98 89 0.3333 0.2959 0.3258 0.054 1yqh-a1-m1-cB_1yqh-a1-m2-cB
12 3zq6-a2-m1-cD 307 48 0.1839 0.0521 0.3333 1.1 3zq6-a2-m1-cC_3zq6-a2-m1-cD
13 3zq6-a2-m1-cC 284 43 0.1839 0.0563 0.3721 1.4 3zq6-a2-m1-cC_3zq6-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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