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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
KEKHVPEMKLSGNHVDIRCGATVMHPATEKHYIGTIRLFGITKEGNVTLELGCQQIWPGL
GEPVASFRVCDLEKYKGLLAVAYCNLHGCWENYMEL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4d7p-a1-m4-cA 96 96 1.0000 1.0000 1.0000 2.46e-69 4d7p-a1-m1-cA_4d7p-a1-m4-cA, 4d7p-a1-m2-cA_4d7p-a1-m4-cA, 4d7p-a1-m3-cA_4d7p-a1-m4-cA
2 4d7p-a1-m3-cA 96 96 1.0000 1.0000 1.0000 2.46e-69 4d7p-a1-m3-cA_4d7p-a1-m4-cA
3 4d7p-a1-m2-cA 96 96 1.0000 1.0000 1.0000 2.46e-69 4d7p-a1-m2-cA_4d7p-a1-m4-cA
4 4d7p-a1-m1-cA 96 96 1.0000 1.0000 1.0000 2.46e-69 4d7p-a1-m1-cA_4d7p-a1-m4-cA
5 2hvb-a1-m1-cD 115 102 0.3750 0.3130 0.3529 1.20e-09 2hvb-a1-m1-cB_2hvb-a1-m1-cD, 2hvb-a1-m1-cC_2hvb-a1-m1-cD
6 2hvb-a1-m1-cB 115 102 0.3750 0.3130 0.3529 1.20e-09 2hvb-a1-m1-cB_2hvb-a1-m1-cD
7 2hvb-a1-m1-cC 113 102 0.3750 0.3186 0.3529 1.24e-09 2hvb-a1-m1-cC_2hvb-a1-m1-cD
8 1y07-a3-m1-cA 121 90 0.3333 0.2645 0.3556 7.13e-08 1y07-a3-m1-cA_1y07-a3-m1-cB
9 1y07-a3-m1-cB 122 92 0.3333 0.2623 0.3478 8.15e-08 1y07-a3-m1-cA_1y07-a3-m1-cB
10 2ji2-a1-m1-cA 126 91 0.3438 0.2619 0.3626 2.33e-06 2ji2-a1-m1-cB_2ji2-a1-m1-cA
11 3qzb-a1-m4-cA 131 115 0.3229 0.2366 0.2696 2.34e-06 3qzb-a1-m1-cA_3qzb-a1-m4-cA, 3qzb-a1-m2-cA_3qzb-a1-m4-cA, 3qzb-a1-m3-cA_3qzb-a1-m4-cA
12 3qzb-a1-m3-cA 131 115 0.3229 0.2366 0.2696 2.34e-06 3qzb-a1-m3-cA_3qzb-a1-m4-cA
13 3qzb-a1-m2-cA 131 115 0.3229 0.2366 0.2696 2.34e-06 3qzb-a1-m2-cA_3qzb-a1-m4-cA
14 3qzb-a1-m1-cA 131 115 0.3229 0.2366 0.2696 2.34e-06 3qzb-a1-m1-cA_3qzb-a1-m4-cA
15 2ji2-a1-m1-cB 125 91 0.3438 0.2640 0.3626 2.53e-06 2ji2-a1-m1-cB_2ji2-a1-m1-cA
16 4brj-a1-m4-cA 124 104 0.3542 0.2742 0.3269 2.68e-06 4brj-a1-m1-cA_4brj-a1-m4-cA
17 4brj-a1-m1-cA 124 104 0.3542 0.2742 0.3269 2.68e-06 4brj-a1-m1-cA_4brj-a1-m4-cA
18 4brv-a1-m1-cD 124 74 0.2917 0.2258 0.3784 5.60e-06 4brv-a1-m1-cB_4brv-a1-m1-cD
19 4brv-a1-m1-cB 124 74 0.2917 0.2258 0.3784 5.60e-06 4brv-a1-m1-cB_4brv-a1-m1-cD
20 4bk8-a1-m4-cA 123 74 0.2917 0.2276 0.3784 6.13e-06 4bk8-a1-m2-cA_4bk8-a1-m4-cA
21 4bk8-a1-m2-cA 123 74 0.2917 0.2276 0.3784 6.13e-06 4bk8-a1-m2-cA_4bk8-a1-m4-cA
22 4bff-a4-m1-cC 124 107 0.3333 0.2581 0.2991 1.65e-04 4bff-a4-m1-cA_4bff-a4-m1-cC, 4bff-a4-m1-cB_4bff-a4-m1-cC
23 4bff-a4-m1-cB 123 107 0.3333 0.2602 0.2991 1.73e-04 4bff-a4-m1-cA_4bff-a4-m1-cB, 4bff-a4-m1-cB_4bff-a4-m1-cC
24 4bff-a4-m1-cA 123 107 0.3333 0.2602 0.2991 1.73e-04 4bff-a4-m1-cA_4bff-a4-m1-cB, 4bff-a4-m1-cA_4bff-a4-m1-cC
25 6gq8-a1-m1-cD 109 87 0.2708 0.2385 0.2989 2.38e-04 6gq8-a1-m1-cA_6gq8-a1-m1-cD, 6gq8-a1-m1-cB_6gq8-a1-m1-cD, 6gq8-a1-m1-cC_6gq8-a1-m1-cD
26 6gq8-a1-m1-cC 109 87 0.2708 0.2385 0.2989 2.38e-04 6gq8-a1-m1-cC_6gq8-a1-m1-cD
27 6gq8-a1-m1-cB 109 87 0.2708 0.2385 0.2989 2.38e-04 6gq8-a1-m1-cB_6gq8-a1-m1-cD
28 6gq8-a1-m1-cA 109 87 0.2708 0.2385 0.2989 2.38e-04 6gq8-a1-m1-cA_6gq8-a1-m1-cD
29 1dfx-a1-m2-cA 125 91 0.3229 0.2480 0.3407 0.001 1dfx-a1-m1-cA_1dfx-a1-m2-cA
30 1dfx-a1-m1-cA 125 91 0.3229 0.2480 0.3407 0.001 1dfx-a1-m1-cA_1dfx-a1-m2-cA
31 8frd-a2-m1-cB 369 35 0.1250 0.0325 0.3429 0.49 8frd-a2-m1-cA_8frd-a2-m1-cB
32 8frd-a2-m1-cA 369 35 0.1250 0.0325 0.3429 0.49 8frd-a2-m1-cA_8frd-a2-m1-cB
33 3tfc-a1-m2-cB 330 24 0.1250 0.0364 0.5000 4.4 3tfc-a1-m2-cB_3tfc-a1-m1-cA, 3tfc-a1-m2-cB_3tfc-a1-m2-cA
34 3tfc-a1-m2-cA 343 24 0.1250 0.0350 0.5000 4.5 3tfc-a1-m1-cA_3tfc-a1-m2-cA, 3tfc-a1-m2-cB_3tfc-a1-m2-cA
35 3tfc-a1-m1-cA 343 24 0.1250 0.0350 0.5000 4.5 3tfc-a1-m1-cA_3tfc-a1-m2-cA, 3tfc-a1-m2-cB_3tfc-a1-m1-cA
36 3dx5-a1-m2-cA 267 45 0.1458 0.0524 0.3111 4.9 3dx5-a1-m1-cA_3dx5-a1-m2-cA
37 3dx5-a1-m1-cA 267 45 0.1458 0.0524 0.3111 4.9 3dx5-a1-m1-cA_3dx5-a1-m2-cA
38 8b1n-a1-m1-cB 410 16 0.1042 0.0244 0.6250 6.3 8b1n-a1-m1-cB_8b1n-a1-m1-cA
39 8b1n-a1-m1-cA 433 16 0.1042 0.0231 0.6250 6.4 8b1n-a1-m1-cB_8b1n-a1-m1-cA
40 1ou5-a1-m1-cB 344 16 0.1042 0.0291 0.6250 6.7 1ou5-a1-m1-cA_1ou5-a1-m1-cB
41 1ou5-a1-m1-cA 344 16 0.1042 0.0291 0.6250 6.7 1ou5-a1-m1-cA_1ou5-a1-m1-cB
42 3i2t-a1-m2-cA 542 78 0.2188 0.0387 0.2692 6.8 3i2t-a1-m1-cA_3i2t-a1-m2-cA
43 3i2t-a1-m1-cA 542 78 0.2188 0.0387 0.2692 6.8 3i2t-a1-m1-cA_3i2t-a1-m2-cA
44 6pkv-a1-m1-cD 1087 30 0.1042 0.0092 0.3333 7.0 6pkv-a1-m1-cC_6pkv-a1-m1-cD
45 6pkv-a1-m1-cC 1087 30 0.1042 0.0092 0.3333 7.0 6pkv-a1-m1-cC_6pkv-a1-m1-cD
46 3ltf-a1-m1-cC 531 78 0.2188 0.0395 0.2692 7.0 3ltf-a1-m1-cA_3ltf-a1-m1-cC
47 3ltf-a1-m1-cA 522 78 0.2188 0.0402 0.2692 7.2 3ltf-a1-m1-cA_3ltf-a1-m1-cC
48 5wyr-a1-m1-cB 248 17 0.1146 0.0444 0.6471 7.9 5wyr-a1-m1-cA_5wyr-a1-m1-cB
49 5wyr-a1-m1-cA 242 17 0.1146 0.0455 0.6471 7.9 5wyr-a1-m1-cA_5wyr-a1-m1-cB
50 4qg7-a1-m1-cB 198 47 0.1354 0.0657 0.2766 8.0 4qg7-a1-m1-cA_4qg7-a1-m1-cB
51 4qg7-a1-m1-cA 197 47 0.1354 0.0660 0.2766 8.1 4qg7-a1-m1-cA_4qg7-a1-m1-cB
52 7ned-a1-m2-cA 545 39 0.1354 0.0239 0.3333 8.1 7ned-a1-m1-cA_7ned-a1-m2-cA
53 7ned-a1-m1-cA 545 39 0.1354 0.0239 0.3333 8.1 7ned-a1-m1-cA_7ned-a1-m2-cA
54 2f6n-a1-m1-cB 158 62 0.2292 0.1392 0.3548 9.9 2f6n-a1-m1-cB_2f6n-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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