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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
KGSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKL
SRALRYYYDKNIMSKVHGKRYAYRFDFQGLAQACQP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ypr-a1-m1-cA 96 96 1.0000 1.0000 1.0000 1.20e-69 2ypr-a1-m1-cB_2ypr-a1-m1-cA
2 2ypr-a1-m1-cB 92 92 0.9583 1.0000 1.0000 9.41e-67 2ypr-a1-m1-cB_2ypr-a1-m1-cA
3 5e8i-a2-m1-cJ 93 93 0.8438 0.8710 0.8710 3.14e-60 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
4 5e8i-a2-m1-cD 93 93 0.8438 0.8710 0.8710 3.14e-60 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
5 5ybc-a1-m1-cA 92 92 0.8125 0.8478 0.8478 8.94e-59 5ybc-a1-m1-cC_5ybc-a1-m1-cA
6 5ybc-a1-m1-cC 91 91 0.8021 0.8462 0.8462 1.01e-57 5ybc-a1-m1-cC_5ybc-a1-m1-cA
7 2nny-a1-m1-cB 129 91 0.6562 0.4884 0.6923 3.95e-41 2nny-a1-m1-cA_2nny-a1-m1-cB
8 2nny-a1-m1-cA 129 91 0.6562 0.4884 0.6923 3.95e-41 2nny-a1-m1-cA_2nny-a1-m1-cB
9 3wu0-a1-m1-cB 136 91 0.6562 0.4632 0.6923 4.44e-40 3wu0-a1-m1-cB_3wu0-a1-m1-cA
10 6dat-a2-m1-cD 135 91 0.6562 0.4667 0.6923 4.46e-40 6dat-a2-m1-cC_6dat-a2-m1-cD
11 6dat-a2-m1-cC 135 91 0.6562 0.4667 0.6923 4.46e-40 6dat-a2-m1-cC_6dat-a2-m1-cD
12 3wu0-a1-m1-cA 140 91 0.6562 0.4500 0.6923 4.74e-40 3wu0-a1-m1-cB_3wu0-a1-m1-cA
13 1gvj-a1-m1-cA 141 91 0.6562 0.4468 0.6923 5.05e-40 1gvj-a1-m1-cA_1gvj-a1-m1-cB
14 1gvj-a1-m1-cB 146 91 0.6562 0.4315 0.6923 5.79e-40 1gvj-a1-m1-cA_1gvj-a1-m1-cB
15 5ilv-a2-m2-cA 92 82 0.5625 0.5870 0.6585 3.76e-35 5ilv-a2-m1-cA_5ilv-a2-m2-cA
16 5ilv-a2-m1-cA 92 82 0.5625 0.5870 0.6585 3.76e-35 5ilv-a2-m1-cA_5ilv-a2-m2-cA
17 4uuv-a2-m1-cG 95 91 0.5521 0.5579 0.5824 5.44e-33 4uuv-a2-m1-cD_4uuv-a2-m1-cG
18 4uuv-a2-m1-cD 95 91 0.5521 0.5579 0.5824 5.44e-33 4uuv-a2-m1-cD_4uuv-a2-m1-cG
19 1dux-a1-m1-cF 86 81 0.5208 0.5814 0.6173 9.23e-32 1dux-a1-m1-cC_1dux-a1-m1-cF
20 1dux-a1-m1-cC 86 81 0.5208 0.5814 0.6173 9.23e-32 1dux-a1-m1-cC_1dux-a1-m1-cF
21 3gjb-a3-m2-cA 260 65 0.1979 0.0731 0.2923 5.3 3gjb-a3-m2-cA_3gjb-a3-m2-cB
22 3gjb-a3-m1-cA 260 65 0.1979 0.0731 0.2923 5.3 3gjb-a3-m1-cA_3gjb-a3-m2-cB
23 8gqz-a1-m1-cB 436 64 0.2188 0.0482 0.3281 5.5 8gqz-a1-m1-cB_8gqz-a1-m1-cA
24 3gjb-a3-m2-cB 271 65 0.1979 0.0701 0.2923 5.5 3gjb-a3-m1-cA_3gjb-a3-m2-cB, 3gjb-a3-m2-cA_3gjb-a3-m2-cB
25 8gqz-a1-m1-cA 441 64 0.2188 0.0476 0.3281 5.5 8gqz-a1-m1-cB_8gqz-a1-m1-cA
26 4xr9-a1-m1-cB 453 65 0.1875 0.0397 0.2769 5.6 4xr9-a1-m1-cB_4xr9-a1-m1-cA
27 4xr9-a1-m1-cA 456 65 0.1875 0.0395 0.2769 5.6 4xr9-a1-m1-cB_4xr9-a1-m1-cA
28 5h68-a1-m1-cB 332 44 0.1562 0.0452 0.3409 7.7 5h68-a1-m1-cA_5h68-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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