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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
KILELVPLSPTSFVTKYLGTFGGTLVSQSLLASLHTVPLNFFPTSLHSYFIKGGDPRTKI
TYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFAVQR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1tbu-a1-m1-cB 98 98 1.0000 1.0000 1.0000 3.37e-68 1tbu-a1-m1-cC_1tbu-a1-m1-cB
2 1tbu-a1-m1-cD 97 97 0.9898 1.0000 1.0000 2.23e-67 1tbu-a1-m1-cC_1tbu-a1-m1-cD
3 1tbu-a1-m1-cC 96 96 0.9694 0.9896 0.9896 3.45e-65 1tbu-a1-m1-cA_1tbu-a1-m1-cC, 1tbu-a1-m1-cC_1tbu-a1-m1-cB, 1tbu-a1-m1-cC_1tbu-a1-m1-cD
4 1tbu-a1-m1-cA 96 96 0.9694 0.9896 0.9896 4.20e-65 1tbu-a1-m1-cA_1tbu-a1-m1-cC
5 1c8u-a1-m1-cB 285 68 0.3061 0.1053 0.4412 1.16e-12 1c8u-a1-m1-cA_1c8u-a1-m1-cB
6 1c8u-a1-m1-cA 285 68 0.3061 0.1053 0.4412 1.16e-12 1c8u-a1-m1-cA_1c8u-a1-m1-cB
7 4r9z-a1-m1-cA 245 77 0.2959 0.1184 0.3766 1.68e-12 4r9z-a1-m1-cA_4r9z-a1-m1-cB
8 4qfw-a3-m1-cD 263 78 0.3265 0.1217 0.4103 3.23e-12 4qfw-a3-m1-cD_4qfw-a3-m1-cC
9 4qfw-a1-m1-cD 263 78 0.3265 0.1217 0.4103 3.23e-12 4qfw-a1-m1-cD_4qfw-a1-m1-cB
10 4qfw-a1-m1-cB 265 78 0.3265 0.1208 0.4103 3.31e-12 4qfw-a1-m1-cD_4qfw-a1-m1-cB
11 4qfw-a3-m1-cC 269 78 0.3265 0.1190 0.4103 3.72e-12 4qfw-a3-m1-cD_4qfw-a3-m1-cC
12 3u0a-a3-m3-cB 252 90 0.3367 0.1310 0.3667 5.95e-12 3u0a-a3-m3-cB_3u0a-a3-m1-cA, 3u0a-a3-m3-cB_3u0a-a3-m3-cA
13 3u0a-a2-m2-cB 252 90 0.3367 0.1310 0.3667 5.95e-12 3u0a-a2-m2-cB_3u0a-a2-m1-cA
14 4r9z-a1-m1-cB 248 76 0.2857 0.1129 0.3684 1.21e-11 4r9z-a1-m1-cA_4r9z-a1-m1-cB
15 3u0a-a3-m3-cA 256 70 0.2653 0.1016 0.3714 1.45e-11 3u0a-a3-m1-cA_3u0a-a3-m3-cA, 3u0a-a3-m3-cB_3u0a-a3-m3-cA
16 3u0a-a3-m1-cA 256 70 0.2653 0.1016 0.3714 1.45e-11 3u0a-a3-m1-cA_3u0a-a3-m3-cA, 3u0a-a3-m3-cB_3u0a-a3-m1-cA
17 3u0a-a2-m1-cA 256 70 0.2653 0.1016 0.3714 1.45e-11 3u0a-a2-m2-cB_3u0a-a2-m1-cA
18 3rd7-a1-m1-cB 276 101 0.2959 0.1051 0.2871 1.07e-07 3rd7-a1-m1-cA_3rd7-a1-m1-cB
19 3rd7-a1-m1-cA 275 101 0.2959 0.1055 0.2871 1.15e-07 3rd7-a1-m1-cA_3rd7-a1-m1-cB
20 1y6z-a1-m1-cB 246 69 0.1837 0.0732 0.2609 2.5 1y6z-a1-m1-cA_1y6z-a1-m1-cB
21 1y6z-a1-m1-cA 242 69 0.1837 0.0744 0.2609 2.7 1y6z-a1-m1-cA_1y6z-a1-m1-cB
22 7q5p-a1-m1-cC 627 36 0.1327 0.0207 0.3611 6.6 7q5p-a1-m1-cB_7q5p-a1-m1-cC
23 7q5p-a1-m1-cB 627 36 0.1327 0.0207 0.3611 6.6 7q5p-a1-m1-cB_7q5p-a1-m1-cC
24 6giw-a1-m1-cB 155 30 0.1020 0.0645 0.3333 7.0 6giw-a1-m1-cB_6giw-a1-m1-cC
25 6giw-a1-m1-cC 157 30 0.1020 0.0637 0.3333 8.8 6giw-a1-m1-cB_6giw-a1-m1-cC
26 2dre-a1-m1-cD 177 30 0.1020 0.0565 0.3333 9.8 2dre-a1-m1-cC_2dre-a1-m1-cD
27 2dre-a1-m1-cC 177 30 0.1020 0.0565 0.3333 9.8 2dre-a1-m1-cC_2dre-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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