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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=81)
KLAVVTGQIVCTVRHHGLAHDKLLVEIDPQGNPDGQCAVAIDNIGAGTGEWVLLVSGSVD
LCVIGIVDEVVSGGQVIFHKL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2hd3-a1-m1-cC 81 81 1.0000 1.0000 1.0000 9.01e-53 2hd3-a1-m1-cC_2hd3-a1-m1-cD
2 2hd3-a1-m1-cD 93 93 1.0000 0.8710 0.8710 1.09e-49 2hd3-a1-m1-cC_2hd3-a1-m1-cD
3 2z9h-a1-m1-cC 83 82 0.9506 0.9277 0.9390 3.66e-48 2z9h-a1-m1-cC_2z9h-a1-m1-cB
4 2z9h-a1-m1-cB 97 95 0.9753 0.8144 0.8316 1.83e-46 2z9h-a1-m1-cC_2z9h-a1-m1-cB
5 4i7a-a1-m1-cE 87 79 0.3704 0.3448 0.3797 2.77e-07 4i7a-a1-m1-cD_4i7a-a1-m1-cE
6 4i7a-a1-m1-cD 87 79 0.3704 0.3448 0.3797 2.77e-07 4i7a-a1-m1-cD_4i7a-a1-m1-cE
7 2qw7-a2-m1-cJ 96 94 0.3951 0.3333 0.3404 4.30e-07 2qw7-a2-m1-cI_2qw7-a2-m1-cJ
8 2qw7-a2-m1-cI 96 94 0.3951 0.3333 0.3404 4.30e-07 2qw7-a2-m1-cI_2qw7-a2-m1-cJ
9 4jw0-a1-m1-cD 95 90 0.3827 0.3263 0.3444 5.58e-07 4jw0-a1-m1-cC_4jw0-a1-m1-cD
10 4jw0-a1-m1-cC 95 90 0.3827 0.3263 0.3444 5.58e-07 4jw0-a1-m1-cC_4jw0-a1-m1-cD
11 2rcf-a1-m1-cE 80 81 0.3457 0.3500 0.3457 3.42e-04 2rcf-a1-m1-cD_2rcf-a1-m1-cE
12 2rcf-a1-m1-cD 80 81 0.3457 0.3500 0.3457 3.42e-04 2rcf-a1-m1-cD_2rcf-a1-m1-cE
13 5l37-a1-m1-cD 77 57 0.2716 0.2857 0.3860 0.005 5l37-a1-m1-cD_5l37-a1-m1-cE
14 5l37-a1-m1-cE 78 57 0.2716 0.2821 0.3860 0.005 5l37-a1-m1-cD_5l37-a1-m1-cE
15 6jy5-a1-m1-cD 82 76 0.3086 0.3049 0.3289 0.17 6jy5-a1-m1-cB_6jy5-a1-m1-cD
16 6jy5-a1-m1-cB 82 76 0.3086 0.3049 0.3289 0.17 6jy5-a1-m1-cB_6jy5-a1-m1-cD
17 6ovt-a1-m1-cC 557 56 0.2593 0.0377 0.3750 1.2 6ovt-a1-m1-cC_6ovt-a1-m1-cD
18 6ovt-a1-m1-cD 559 56 0.2593 0.0376 0.3750 1.2 6ovt-a1-m1-cB_6ovt-a1-m1-cD, 6ovt-a1-m1-cC_6ovt-a1-m1-cD, 6ovt-a1-m1-cD_6ovt-a1-m1-cA
19 6ovt-a1-m1-cA 561 56 0.2593 0.0374 0.3750 1.2 6ovt-a1-m1-cD_6ovt-a1-m1-cA
20 4qdc-a1-m3-cA 369 30 0.1605 0.0352 0.4333 1.3 4qdc-a1-m2-cA_4qdc-a1-m3-cA
21 4qdc-a1-m2-cA 369 30 0.1605 0.0352 0.4333 1.3 4qdc-a1-m2-cA_4qdc-a1-m3-cA
22 7mfs-a1-m1-cBBB 222 24 0.1605 0.0586 0.5417 4.8 7mfs-a1-m1-cAAA_7mfs-a1-m1-cBBB
23 7mfs-a1-m1-cAAA 222 24 0.1605 0.0586 0.5417 4.8 7mfs-a1-m1-cAAA_7mfs-a1-m1-cBBB
24 6vva-a1-m1-cB 222 24 0.1605 0.0586 0.5417 4.8 6vva-a1-m1-cA_6vva-a1-m1-cB
25 6vva-a1-m1-cA 222 24 0.1605 0.0586 0.5417 4.8 6vva-a1-m1-cA_6vva-a1-m1-cB
26 5wce-a1-m1-cA 370 33 0.1728 0.0378 0.4242 9.9 5wce-a1-m1-cB_5wce-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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