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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
KLDDLHHIAISVTDVAQSVEWYTSHFQCRIAYQDSTWALLKFGNLSLALVIPEQHPPHIA
FTSDRAGEYGSLKTHRDGTRSCYIQDPSGNSVELDPTSL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4rt5-a1-m1-cB 99 99 1.0000 1.0000 1.0000 1.54e-71 4rt5-a1-m1-cB_4rt5-a1-m1-cA
2 4rt5-a1-m1-cA 100 99 1.0000 0.9900 1.0000 1.68e-71 4rt5-a1-m1-cB_4rt5-a1-m1-cA
3 7n7g-a1-m1-cB 133 112 0.3737 0.2782 0.3304 1.21e-05 7n7g-a1-m1-cB_7n7g-a1-m1-cA
4 7n7g-a1-m1-cA 138 117 0.3737 0.2681 0.3162 6.91e-05 7n7g-a1-m1-cB_7n7g-a1-m1-cA
5 4ir0-a1-m1-cB 132 120 0.3030 0.2273 0.2500 0.002 4ir0-a1-m1-cB_4ir0-a1-m1-cA
6 4ir0-a1-m1-cA 143 120 0.3030 0.2098 0.2500 0.002 4ir0-a1-m1-cB_4ir0-a1-m1-cA
7 6on1-a3-m1-cF 142 42 0.1414 0.0986 0.3333 0.003 6on1-a3-m1-cE_6on1-a3-m1-cF
8 6on1-a3-m1-cE 142 42 0.1414 0.0986 0.3333 0.003 6on1-a3-m1-cE_6on1-a3-m1-cF
9 5wew-a3-m1-cE 119 107 0.3232 0.2689 0.2991 0.006 5wew-a3-m1-cE_5wew-a3-m1-cF
10 5wew-a3-m1-cF 137 119 0.3333 0.2409 0.2773 0.053 5wew-a3-m1-cE_5wew-a3-m1-cF
11 5v3d-a1-m1-cB 137 119 0.3333 0.2409 0.2773 0.053 5v3d-a1-m1-cB_5v3d-a1-m1-cA
12 5v3d-a1-m1-cA 138 119 0.3333 0.2391 0.2773 0.055 5v3d-a1-m1-cB_5v3d-a1-m1-cA
13 1npb-a2-m1-cD 137 118 0.3333 0.2409 0.2797 0.075 1npb-a2-m1-cD_1npb-a2-m1-cC
14 1npb-a2-m1-cC 138 118 0.3333 0.2391 0.2797 0.078 1npb-a2-m1-cD_1npb-a2-m1-cC
15 3r4q-a1-m1-cA 138 56 0.2020 0.1449 0.3571 0.087 3r4q-a1-m1-cB_3r4q-a1-m1-cA
16 3r4q-a1-m1-cB 134 56 0.2020 0.1493 0.3571 0.091 3r4q-a1-m1-cB_3r4q-a1-m1-cA
17 7wcc-a2-m3-cD 126 19 0.1010 0.0794 0.5263 0.38 7wcc-a2-m1-cB_7wcc-a2-m3-cD
18 7wcc-a2-m1-cB 126 19 0.1010 0.0794 0.5263 0.38 7wcc-a2-m1-cB_7wcc-a2-m3-cD
19 1lqo-a1-m1-cB 134 109 0.2828 0.2090 0.2569 0.43 1lqo-a1-m1-cA_1lqo-a1-m1-cB
20 1lqo-a1-m1-cA 134 109 0.2828 0.2090 0.2569 0.43 1lqo-a1-m1-cA_1lqo-a1-m1-cB
21 4jh2-a1-m1-cB 138 121 0.2727 0.1957 0.2231 0.50 4jh2-a1-m1-cA_4jh2-a1-m1-cB
22 4jh2-a1-m1-cA 138 121 0.2727 0.1957 0.2231 0.50 4jh2-a1-m1-cA_4jh2-a1-m1-cB
23 6a4x-a1-m2-cA 127 21 0.0909 0.0709 0.4286 0.51 6a4x-a1-m1-cA_6a4x-a1-m2-cA
24 6a4x-a1-m1-cA 127 21 0.0909 0.0709 0.4286 0.51 6a4x-a1-m1-cA_6a4x-a1-m2-cA
25 8he6-a1-m1-cB 120 21 0.1010 0.0833 0.4762 0.68 8he6-a1-m1-cA_8he6-a1-m1-cB
26 8he6-a1-m1-cA 120 21 0.1010 0.0833 0.4762 0.68 8he6-a1-m1-cA_8he6-a1-m1-cB
27 7w5e-a1-m1-cD 118 22 0.0909 0.0763 0.4091 1.1 7w5e-a1-m1-cC_7w5e-a1-m1-cD
28 6bu2-a1-m1-cB 151 30 0.0909 0.0596 0.3000 1.6 6bu2-a1-m1-cA_6bu2-a1-m1-cB
29 6bu2-a1-m1-cA 150 30 0.0909 0.0600 0.3000 1.7 6bu2-a1-m1-cA_6bu2-a1-m1-cB
30 7w5e-a1-m1-cA 125 19 0.0909 0.0720 0.4737 1.9 7w5e-a1-m1-cB_7w5e-a1-m1-cA
31 3rri-a2-m1-cB 128 29 0.0808 0.0625 0.2759 3.2 3rri-a2-m1-cA_3rri-a2-m1-cB
32 3rri-a2-m1-cA 128 29 0.0808 0.0625 0.2759 3.2 3rri-a2-m1-cA_3rri-a2-m1-cB
33 3rri-a1-m4-cB 128 29 0.0808 0.0625 0.2759 3.2 3rri-a1-m2-cA_3rri-a1-m4-cB, 3rri-a1-m2-cB_3rri-a1-m4-cB
34 3rri-a1-m2-cB 128 29 0.0808 0.0625 0.2759 3.2 3rri-a1-m2-cB_3rri-a1-m4-cB
35 3rri-a1-m2-cA 128 29 0.0808 0.0625 0.2759 3.2 3rri-a1-m2-cA_3rri-a1-m4-cB
36 3l7t-a2-m1-cC 133 26 0.1010 0.0752 0.3846 4.5 3l7t-a2-m1-cB_3l7t-a2-m1-cC
37 3l7t-a2-m1-cB 133 26 0.1010 0.0752 0.3846 4.5 3l7t-a2-m1-cB_3l7t-a2-m1-cC
38 4n04-a3-m1-cB 109 100 0.2222 0.2018 0.2200 6.2 4n04-a3-m1-cB_4n04-a3-m1-cA
39 4n04-a3-m1-cA 110 100 0.2222 0.2000 0.2200 6.7 4n04-a3-m1-cB_4n04-a3-m1-cA
40 7w5e-a1-m1-cB 120 23 0.1010 0.0833 0.4348 9.6 7w5e-a1-m1-cB_7w5e-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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