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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
KNRIQVSNTKKPLFFYVNLAKRYQQYNDVELSALGAIATVVTVTEILKNNGFAVEKKITS
IVDIKDDARGRPVQKAKIEITLVKSEKFDELAAANEEKE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2q3v-a2-m1-cB 99 99 1.0000 1.0000 1.0000 3.40e-67 2q3v-a2-m1-cA_2q3v-a2-m1-cB
2 2q3v-a1-m2-cB 99 99 1.0000 1.0000 1.0000 3.40e-67 2q3v-a1-m1-cA_2q3v-a1-m2-cB, 2q3v-a1-m1-cB_2q3v-a1-m2-cB
3 2q3v-a1-m1-cB 99 99 1.0000 1.0000 1.0000 3.40e-67 2q3v-a1-m1-cB_2q3v-a1-m2-cB
4 2q3v-a2-m1-cA 89 94 0.8889 0.9888 0.9362 1.23e-55 2q3v-a2-m1-cA_2q3v-a2-m1-cB
5 2q3v-a1-m1-cA 89 94 0.8889 0.9888 0.9362 1.23e-55 2q3v-a1-m1-cA_2q3v-a1-m2-cB
6 7dl8-a1-m1-cA 114 90 0.3232 0.2807 0.3556 7.47e-04 7dl8-a1-m1-cD_7dl8-a1-m1-cA
7 7dl8-a1-m1-cC 98 90 0.3232 0.3265 0.3556 8.26e-04 7dl8-a1-m1-cC_7dl8-a1-m1-cD
8 7dl8-a1-m1-cD 109 90 0.3232 0.2936 0.3556 0.001 7dl8-a1-m1-cC_7dl8-a1-m1-cD, 7dl8-a1-m1-cD_7dl8-a1-m1-cA
9 5tf0-a1-m1-cB 706 51 0.2020 0.0283 0.3922 0.99 5tf0-a1-m1-cA_5tf0-a1-m1-cB
10 7yxm-a1-m1-cD 392 58 0.2020 0.0510 0.3448 1.9 7yxm-a1-m1-cB_7yxm-a1-m1-cD
11 7yxm-a1-m1-cB 392 58 0.2020 0.0510 0.3448 1.9 7yxm-a1-m1-cB_7yxm-a1-m1-cD
12 2r6e-a1-m3-cB 387 78 0.2222 0.0568 0.2821 4.1 2r6e-a1-m1-cA_2r6e-a1-m3-cB, 2r6e-a1-m2-cA_2r6e-a1-m3-cB, 2r6e-a1-m3-cA_2r6e-a1-m3-cB
13 2r6e-a1-m3-cA 387 78 0.2222 0.0568 0.2821 4.1 2r6e-a1-m3-cA_2r6e-a1-m3-cB
14 2r6e-a1-m2-cA 387 78 0.2222 0.0568 0.2821 4.1 2r6e-a1-m2-cA_2r6e-a1-m3-cB
15 2r6e-a1-m1-cA 387 78 0.2222 0.0568 0.2821 4.1 2r6e-a1-m1-cA_2r6e-a1-m3-cB
16 4esv-a2-m1-cH 425 78 0.2222 0.0518 0.2821 4.1 4esv-a2-m1-cG_4esv-a2-m1-cH
17 4esv-a2-m1-cL 419 78 0.2222 0.0525 0.2821 4.3 4esv-a2-m1-cL_4esv-a2-m1-cG, 4esv-a2-m1-cL_4esv-a2-m1-cK
18 2r6a-a1-m3-cA 420 78 0.2222 0.0524 0.2821 4.5 2r6a-a1-m1-cB_2r6a-a1-m3-cA, 2r6a-a1-m3-cB_2r6a-a1-m3-cA
19 2r6d-a1-m1-cA 405 78 0.2222 0.0543 0.2821 4.5 2r6d-a1-m1-cB_2r6d-a1-m1-cA
20 2r6d-a1-m1-cD 376 78 0.2222 0.0585 0.2821 4.6 2r6d-a1-m1-cD_2r6d-a1-m1-cC, 2r6d-a1-m1-cD_2r6d-a1-m1-cE
21 2r6d-a1-m1-cB 376 78 0.2222 0.0585 0.2821 4.6 2r6d-a1-m1-cB_2r6d-a1-m1-cA, 2r6d-a1-m1-cB_2r6d-a1-m1-cC
22 4esv-a2-m1-cK 421 78 0.2222 0.0523 0.2821 4.7 4esv-a2-m1-cJ_4esv-a2-m1-cK, 4esv-a2-m1-cL_4esv-a2-m1-cK
23 2r6d-a1-m1-cC 399 78 0.2222 0.0551 0.2821 4.7 2r6d-a1-m1-cB_2r6d-a1-m1-cC, 2r6d-a1-m1-cD_2r6d-a1-m1-cC
24 4esv-a2-m1-cG 421 78 0.2222 0.0523 0.2821 4.8 4esv-a2-m1-cG_4esv-a2-m1-cH, 4esv-a2-m1-cL_4esv-a2-m1-cG
25 2r6d-a1-m1-cF 392 78 0.2222 0.0561 0.2821 4.8 2r6d-a1-m1-cE_2r6d-a1-m1-cF
26 2r6d-a1-m1-cE 392 78 0.2222 0.0561 0.2821 4.8 2r6d-a1-m1-cD_2r6d-a1-m1-cE, 2r6d-a1-m1-cE_2r6d-a1-m1-cF
27 4esv-a2-m1-cJ 416 75 0.2121 0.0505 0.2800 5.0 4esv-a2-m1-cJ_4esv-a2-m1-cK
28 2r6a-a1-m3-cB 374 78 0.2222 0.0588 0.2821 5.1 2r6a-a1-m3-cB_2r6a-a1-m3-cA
29 2r6a-a1-m1-cB 374 78 0.2222 0.0588 0.2821 5.1 2r6a-a1-m1-cB_2r6a-a1-m3-cA
30 4m4w-a1-m1-cD 358 75 0.2121 0.0587 0.2800 5.8 4m4w-a1-m1-cB_4m4w-a1-m1-cD
31 4m4w-a1-m1-cB 358 75 0.2121 0.0587 0.2800 5.8 4m4w-a1-m1-cB_4m4w-a1-m1-cD
32 2r6c-a1-m2-cE 358 75 0.2121 0.0587 0.2800 5.8 2r6c-a1-m1-cD_2r6c-a1-m2-cE
33 2r6c-a1-m2-cD 358 75 0.2121 0.0587 0.2800 5.8 2r6c-a1-m2-cA_2r6c-a1-m2-cD
34 2r6c-a1-m2-cA 358 75 0.2121 0.0587 0.2800 5.8 2r6c-a1-m2-cA_2r6c-a1-m2-cD
35 2r6c-a1-m1-cD 358 75 0.2121 0.0587 0.2800 5.8 2r6c-a1-m1-cD_2r6c-a1-m2-cE
36 3trf-a2-m3-cB 168 61 0.1818 0.1071 0.2951 7.0 3trf-a2-m1-cB_3trf-a2-m3-cB
37 3trf-a2-m1-cB 168 61 0.1818 0.1071 0.2951 7.0 3trf-a2-m1-cB_3trf-a2-m3-cB

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Reference:
Jacob Schwartz et al.

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