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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
KPDRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISE
GKIDVIEIVPWLERPRSLTL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2y4y-a1-m2-cD 80 80 1.0000 1.0000 1.0000 5.95e-54 2y4y-a1-m1-cB_2y4y-a1-m2-cD
2 2y4y-a1-m2-cC 79 77 0.9500 0.9620 0.9870 1.80e-48 2y4y-a1-m2-cB_2y4y-a1-m2-cC
3 2y4y-a1-m2-cB 76 77 0.9375 0.9868 0.9740 7.55e-47 2y4y-a1-m1-cB_2y4y-a1-m2-cB, 2y4y-a1-m2-cB_2y4y-a1-m2-cC
4 2y4y-a1-m1-cB 76 77 0.9375 0.9868 0.9740 7.55e-47 2y4y-a1-m1-cB_2y4y-a1-m2-cB, 2y4y-a1-m1-cB_2y4y-a1-m2-cD
5 4mou-a1-m1-cC 250 46 0.2250 0.0720 0.3913 0.26 4mou-a1-m1-cC_4mou-a1-m1-cB
6 4mou-a1-m1-cB 253 46 0.2250 0.0711 0.3913 0.28 4mou-a1-m1-cC_4mou-a1-m1-cB
7 4atm-a1-m2-cA 221 74 0.2375 0.0860 0.2568 1.7 4atm-a1-m1-cA_4atm-a1-m2-cA
8 4atm-a1-m1-cA 221 74 0.2375 0.0860 0.2568 1.7 4atm-a1-m1-cA_4atm-a1-m2-cA
9 2ipc-a2-m1-cD 934 39 0.1875 0.0161 0.3846 3.1 2ipc-a2-m1-cD_2ipc-a2-m1-cC
10 2ipc-a2-m1-cC 939 39 0.1875 0.0160 0.3846 3.1 2ipc-a2-m1-cD_2ipc-a2-m1-cC
11 7vey-a2-m1-cD 396 55 0.2125 0.0429 0.3091 5.2 7vey-a2-m1-cD_7vey-a2-m1-cB
12 2dg1-a7-m2-cA 321 27 0.1375 0.0343 0.4074 5.5 2dg1-a7-m2-cA_2dg1-a7-m1-cB
13 2dg1-a7-m1-cB 322 27 0.1375 0.0342 0.4074 5.5 2dg1-a7-m2-cA_2dg1-a7-m1-cB
14 7vey-a2-m1-cB 398 55 0.2125 0.0427 0.3091 5.5 7vey-a2-m1-cD_7vey-a2-m1-cB
15 6gun-a2-m2-cC 290 48 0.1875 0.0517 0.3125 6.7 6gun-a2-m2-cC_6gun-a2-m1-cD
16 5a98-a1-m3-cA 235 33 0.1750 0.0596 0.4242 6.9 5a98-a1-m2-cA_5a98-a1-m3-cA
17 5a98-a1-m2-cA 235 33 0.1750 0.0596 0.4242 6.9 5a98-a1-m2-cA_5a98-a1-m3-cA
18 6gun-a2-m1-cD 298 48 0.1875 0.0503 0.3125 6.9 6gun-a2-m2-cC_6gun-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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