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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=85)
KRFEVKKWNAVALWAWDIVVDNCAICRNHIDLCIECQANQASATSEECTVAWGVCNHAFH
FHCISRWLKTRQVCPLDNREWEFQK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3dqv-a3-m2-cR 85 85 1.0000 1.0000 1.0000 1.21e-58 3dqv-a3-m1-cY_3dqv-a3-m2-cR
2 1ldk-a2-m2-cC 88 86 1.0000 0.9659 0.9884 4.27e-57 1ldk-a2-m1-cC_1ldk-a2-m2-cC
3 1ldk-a2-m1-cC 88 86 1.0000 0.9659 0.9884 4.27e-57 1ldk-a2-m1-cC_1ldk-a2-m2-cC
4 3dqv-a3-m1-cY 84 85 0.9765 0.9881 0.9765 4.21e-55 3dqv-a3-m1-cY_3dqv-a3-m2-cR
5 4r2y-a6-m3-cC 65 68 0.2941 0.3846 0.3676 3.44e-11 4r2y-a6-m1-cC_4r2y-a6-m3-cC, 4r2y-a6-m3-cD_4r2y-a6-m3-cC
6 4r2y-a6-m1-cC 65 68 0.2941 0.3846 0.3676 3.44e-11 4r2y-a6-m1-cC_4r2y-a6-m3-cC, 4r2y-a6-m3-cD_4r2y-a6-m1-cC
7 4r2y-a6-m3-cD 62 68 0.2941 0.4032 0.3676 2.07e-10 4r2y-a6-m3-cD_4r2y-a6-m1-cC, 4r2y-a6-m3-cD_4r2y-a6-m3-cC
8 5din-a1-m1-cA 120 30 0.1176 0.0833 0.3333 0.10 5din-a1-m1-cA_5din-a1-m1-cB
9 5din-a1-m1-cB 124 30 0.1176 0.0806 0.3333 0.11 5din-a1-m1-cA_5din-a1-m1-cB
10 4whv-a2-m1-cJ 101 22 0.1059 0.0891 0.4091 2.1 4whv-a2-m1-cI_4whv-a2-m1-cJ
11 4whv-a2-m1-cI 101 22 0.1059 0.0891 0.4091 2.1 4whv-a2-m1-cI_4whv-a2-m1-cJ
12 4ayc-a1-m1-cA 136 22 0.1059 0.0662 0.4091 2.3 4ayc-a1-m2-cB_4ayc-a1-m1-cA
13 4ayc-a1-m2-cB 126 22 0.1059 0.0714 0.4091 2.6 4ayc-a1-m2-cB_4ayc-a1-m1-cA
14 3kic-a1-m3-cT 520 29 0.1412 0.0231 0.4138 6.0 3kic-a1-m2-cG_3kic-a1-m3-cT, 3kic-a1-m2-cP_3kic-a1-m3-cT, 3kic-a1-m3-cR_3kic-a1-m3-cT
15 3kic-a1-m3-cR 520 29 0.1412 0.0231 0.4138 6.0 3kic-a1-m3-cR_3kic-a1-m3-cT
16 3kic-a1-m2-cP 520 29 0.1412 0.0231 0.4138 6.0 3kic-a1-m2-cP_3kic-a1-m3-cT
17 3kic-a1-m2-cG 520 29 0.1412 0.0231 0.4138 6.0 3kic-a1-m2-cG_3kic-a1-m3-cT

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Reference:
Jacob Schwartz et al.

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