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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
KTLMMFVTVSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIK
DFLVSQDRCAEVTLEGQMY

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ofh-a3-m1-cB 79 79 1.0000 1.0000 1.0000 8.52e-56 3ofh-a3-m1-cB_3ofh-a3-m1-cA
2 3ofh-a3-m1-cA 86 79 1.0000 0.9186 1.0000 9.73e-56 3ofh-a3-m1-cB_3ofh-a3-m1-cA
3 3ofg-a1-m1-cB 85 62 0.3418 0.3176 0.4355 5.53e-13 3ofg-a1-m1-cB_3ofg-a1-m1-cA
4 3ofg-a1-m1-cA 89 62 0.3418 0.3034 0.4355 5.89e-13 3ofg-a1-m1-cB_3ofg-a1-m1-cA
5 3hxj-a2-m1-cD 302 38 0.1646 0.0430 0.3421 3.6 3hxj-a2-m1-cC_3hxj-a2-m1-cD
6 4u5w-a1-m1-cD 160 15 0.1013 0.0500 0.5333 4.1 4u5w-a1-m1-cD_4u5w-a1-m1-cB
7 7dbe-a1-m1-cA 330 28 0.1013 0.0242 0.2857 6.3 7dbe-a1-m1-cA_7dbe-a1-m1-cB, 7dbe-a1-m1-cD_7dbe-a1-m1-cA
8 7dbe-a1-m1-cD 329 28 0.1013 0.0243 0.2857 6.4 7dbe-a1-m1-cD_7dbe-a1-m1-cA
9 1nfp-a1-m2-cA 228 17 0.1139 0.0395 0.5294 6.4 1nfp-a1-m1-cA_1nfp-a1-m2-cA
10 1nfp-a1-m1-cA 228 17 0.1139 0.0395 0.5294 6.4 1nfp-a1-m1-cA_1nfp-a1-m2-cA
11 7dbe-a1-m1-cB 332 28 0.1013 0.0241 0.2857 6.4 7dbe-a1-m1-cA_7dbe-a1-m1-cB
12 2gks-a1-m1-cB 529 49 0.2025 0.0302 0.3265 9.5 2gks-a1-m1-cA_2gks-a1-m1-cB
13 2gks-a1-m1-cA 522 49 0.2025 0.0307 0.3265 9.6 2gks-a1-m1-cA_2gks-a1-m1-cB
14 3a43-a3-m3-cB 117 27 0.0886 0.0598 0.2593 9.7 3a43-a3-m3-cB_3a43-a3-m1-cA, 3a43-a3-m3-cB_3a43-a3-m3-cA
15 3a43-a3-m2-cB 117 27 0.0886 0.0598 0.2593 9.7 3a43-a3-m2-cB_3a43-a3-m3-cA

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Reference:
Jacob Schwartz et al.

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