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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
KVVSWIDVYTRATCQPREVVVPLTVELMGTVAKQLVPSCVTVQRCGGCCPDDGLECVPTG
QHQVRMQILMIRYPSSQLGEMSLEEHSQCECRPKK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2c7w-a1-m1-cB 95 95 1.0000 1.0000 1.0000 6.55e-66 2c7w-a1-m1-cA_2c7w-a1-m1-cB
2 2c7w-a1-m1-cA 95 95 1.0000 1.0000 1.0000 6.55e-66 2c7w-a1-m1-cA_2c7w-a1-m1-cB
3 1wq8-a2-m8-cA 99 96 0.4211 0.4040 0.4167 1.81e-23 1wq8-a2-m3-cA_1wq8-a2-m8-cA, 1wq8-a2-m5-cA_1wq8-a2-m8-cA
4 1wq8-a2-m5-cA 99 96 0.4211 0.4040 0.4167 1.81e-23 1wq8-a2-m5-cA_1wq8-a2-m8-cA
5 1wq8-a2-m3-cA 99 96 0.4211 0.4040 0.4167 1.81e-23 1wq8-a2-m3-cA_1wq8-a2-m8-cA
6 1wq9-a1-m1-cA 96 95 0.4105 0.4062 0.4105 8.06e-22 1wq9-a1-m1-cB_1wq9-a1-m1-cA
7 1wq9-a1-m1-cB 95 91 0.4000 0.4000 0.4176 9.65e-22 1wq9-a1-m1-cB_1wq9-a1-m1-cA
8 3v6b-a1-m2-cA 94 91 0.3789 0.3830 0.3956 2.99e-19 3v6b-a1-m1-cA_3v6b-a1-m2-cA
9 3v6b-a1-m1-cA 94 91 0.3789 0.3830 0.3956 2.99e-19 3v6b-a1-m1-cA_3v6b-a1-m2-cA
10 1fzv-a1-m1-cB 100 96 0.3789 0.3600 0.3750 2.81e-16 1fzv-a1-m1-cA_1fzv-a1-m1-cB
11 1fzv-a1-m1-cA 100 96 0.3789 0.3600 0.3750 2.81e-16 1fzv-a1-m1-cA_1fzv-a1-m1-cB
12 2xv7-a1-m2-cA 104 88 0.3053 0.2788 0.3295 3.64e-12 2xv7-a1-m1-cA_2xv7-a1-m2-cA
13 2xv7-a1-m1-cA 104 88 0.3053 0.2788 0.3295 3.64e-12 2xv7-a1-m1-cA_2xv7-a1-m2-cA
14 2x1w-a1-m1-cB 98 98 0.3474 0.3367 0.3367 5.11e-12 2x1w-a1-m1-cA_2x1w-a1-m1-cB
15 2x1w-a1-m1-cA 98 95 0.3368 0.3265 0.3368 1.21e-11 2x1w-a1-m1-cA_2x1w-a1-m1-cB
16 3mjg-a2-m1-cA 97 86 0.3263 0.3196 0.3605 4.65e-08 3mjg-a2-m1-cA_3mjg-a2-m1-cB
17 3mjg-a2-m1-cB 101 86 0.3263 0.3069 0.3605 6.74e-08 3mjg-a2-m1-cA_3mjg-a2-m1-cB
18 3mjk-a3-m1-cX 121 86 0.2842 0.2231 0.3140 6.35e-07 3mjk-a3-m1-cX_3mjk-a3-m1-cY
19 3mjk-a3-m1-cY 129 94 0.3053 0.2248 0.3085 6.91e-07 3mjk-a3-m1-cX_3mjk-a3-m1-cY
20 1pdg-a2-m2-cC 86 59 0.2316 0.2558 0.3729 1.01e-06 1pdg-a2-m1-cC_1pdg-a2-m2-cC
21 1pdg-a2-m1-cC 86 59 0.2316 0.2558 0.3729 1.01e-06 1pdg-a2-m1-cC_1pdg-a2-m2-cC
22 3hxs-a1-m1-cA 117 71 0.2105 0.1709 0.2817 3.0 3hxs-a1-m1-cA_3hxs-a1-m1-cB
23 3hxs-a1-m1-cB 119 71 0.2105 0.1681 0.2817 3.2 3hxs-a1-m1-cA_3hxs-a1-m1-cB
24 7f47-a1-m2-cA 830 28 0.1053 0.0120 0.3571 5.5 7f47-a1-m1-cA_7f47-a1-m2-cA
25 7f47-a1-m1-cA 830 28 0.1053 0.0120 0.3571 5.5 7f47-a1-m1-cA_7f47-a1-m2-cA
26 4rvu-a1-m1-cD 323 40 0.1474 0.0433 0.3500 6.2 4rvu-a1-m1-cD_4rvu-a1-m1-cA
27 5wat-a3-m3-cB 306 40 0.1579 0.0490 0.3750 8.1 5wat-a3-m1-cB_5wat-a3-m3-cB
28 5wat-a3-m1-cB 306 40 0.1579 0.0490 0.3750 8.1 5wat-a3-m1-cB_5wat-a3-m3-cB
29 5wat-a1-m1-cB 306 40 0.1579 0.0490 0.3750 8.1 5wat-a1-m1-cB_5wat-a1-m4-cA
30 4rvu-a1-m1-cA 329 29 0.1263 0.0365 0.4138 8.8 4rvu-a1-m1-cD_4rvu-a1-m1-cA
31 1jxq-a2-m1-cC 242 23 0.1053 0.0413 0.4348 9.9 1jxq-a2-m1-cD_1jxq-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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