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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=81)
KYFMSSVRRMPLNRAKALCSELQGTVATPRNAEENRAIQNVAKDVAFLGIEDLTGCVVLL
TNGKWNDVPCSDSFLVVCEFS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1bv4-a1-m1-cC 81 81 1.0000 1.0000 1.0000 9.69e-57 1bv4-a1-m1-cC_1bv4-a1-m1-cD
2 1bv4-a1-m1-cD 109 107 1.0000 0.7431 0.7570 5.23e-49 1bv4-a1-m1-cC_1bv4-a1-m1-cD
3 1hup-a1-m3-cA 141 110 0.6173 0.3546 0.4545 1.54e-24 1hup-a1-m2-cA_1hup-a1-m3-cA
4 1hup-a1-m2-cA 141 110 0.6173 0.3546 0.4545 1.54e-24 1hup-a1-m2-cA_1hup-a1-m3-cA
5 2ria-a1-m1-cC 146 113 0.4938 0.2740 0.3540 5.32e-12 2ria-a1-m1-cB_2ria-a1-m1-cC
6 2ria-a1-m1-cB 146 113 0.4938 0.2740 0.3540 5.32e-12 2ria-a1-m1-cB_2ria-a1-m1-cC
7 3pbf-a1-m3-cA 145 112 0.4198 0.2345 0.3036 5.04e-09 3pbf-a1-m2-cA_3pbf-a1-m3-cA
8 3pbf-a1-m2-cA 145 112 0.4198 0.2345 0.3036 5.04e-09 3pbf-a1-m2-cA_3pbf-a1-m3-cA
9 6bbe-a1-m3-cA 155 116 0.3827 0.2000 0.2672 4.90e-07 6bbe-a1-m2-cA_6bbe-a1-m3-cA
10 6bbe-a1-m2-cA 155 116 0.3827 0.2000 0.2672 4.90e-07 6bbe-a1-m2-cA_6bbe-a1-m3-cA
11 1htn-a1-m3-cA 156 121 0.3704 0.1923 0.2479 0.013 1htn-a1-m2-cA_1htn-a1-m3-cA
12 1htn-a1-m2-cA 156 121 0.3704 0.1923 0.2479 0.013 1htn-a1-m2-cA_1htn-a1-m3-cA
13 7kx0-a1-m1-cC 140 32 0.1605 0.0929 0.4062 0.20 7kx0-a1-m1-cB_7kx0-a1-m1-cC
14 7kx0-a1-m1-cB 140 32 0.1605 0.0929 0.4062 0.20 7kx0-a1-m1-cB_7kx0-a1-m1-cC
15 6w12-a2-m2-cA 129 79 0.2346 0.1473 0.2405 0.48 6w12-a2-m1-cA_6w12-a2-m2-cA
16 6w12-a2-m1-cA 129 79 0.2346 0.1473 0.2405 0.48 6w12-a2-m1-cA_6w12-a2-m2-cA
17 6py1-a2-m2-cA 130 79 0.2346 0.1462 0.2405 0.49 6py1-a2-m1-cA_6py1-a2-m2-cA
18 6py1-a2-m1-cA 130 79 0.2346 0.1462 0.2405 0.49 6py1-a2-m1-cA_6py1-a2-m2-cA
19 3jyn-a1-m2-cA 325 50 0.2346 0.0585 0.3800 0.58 3jyn-a1-m1-cA_3jyn-a1-m2-cA
20 3jyn-a1-m1-cA 325 50 0.2346 0.0585 0.3800 0.58 3jyn-a1-m1-cA_3jyn-a1-m2-cA
21 5m62-a2-m4-cB 136 15 0.0988 0.0588 0.5333 0.83 5m62-a2-m3-cB_5m62-a2-m4-cB
22 5m62-a2-m3-cB 136 15 0.0988 0.0588 0.5333 0.83 5m62-a2-m3-cB_5m62-a2-m4-cB
23 5k8y-a1-m1-cB 136 15 0.0988 0.0588 0.5333 0.90 5k8y-a1-m1-cA_5k8y-a1-m1-cB
24 5k8y-a1-m1-cA 136 15 0.0988 0.0588 0.5333 0.90 5k8y-a1-m1-cA_5k8y-a1-m1-cB
25 7jpu-a1-m1-cD 1155 21 0.1358 0.0095 0.5238 2.1 7jpu-a1-m1-cD_7jpu-a1-m1-cA, 7jpu-a1-m1-cD_7jpu-a1-m1-cC
26 7jpu-a1-m1-cC 1156 21 0.1358 0.0095 0.5238 2.1 7jpu-a1-m1-cD_7jpu-a1-m1-cC
27 7jpu-a1-m1-cA 1156 21 0.1358 0.0095 0.5238 2.1 7jpu-a1-m1-cD_7jpu-a1-m1-cA
28 5jq1-a1-m1-cA 130 24 0.1111 0.0692 0.3750 6.3 5jq1-a1-m1-cB_5jq1-a1-m1-cA
29 5jq1-a1-m1-cB 129 24 0.1111 0.0698 0.3750 6.6 5jq1-a1-m1-cB_5jq1-a1-m1-cA
30 7f27-a2-m1-cC 404 50 0.2099 0.0421 0.3400 9.6 7f27-a2-m1-cC_7f27-a2-m1-cD
31 7f27-a2-m1-cD 408 50 0.2099 0.0417 0.3400 9.6 7f27-a2-m1-cC_7f27-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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