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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
KYKVWRRQQMSFINKHERTLAIDGDYIYIVPVKTKSLHISQVVLVKKSKRVPEHFKIFVR
REGQDDIKRYYFEAVSGQECTEIVTRLQNLLSAYRMN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ulb-a1-m1-cB 97 97 1.0000 1.0000 1.0000 2.98e-69 3ulb-a1-m1-cB_3ulb-a1-m1-cA
2 3ulb-a1-m1-cA 102 100 1.0000 0.9510 0.9700 7.50e-67 3ulb-a1-m1-cB_3ulb-a1-m1-cA
3 3ulc-a1-m2-cA 100 100 0.9691 0.9400 0.9400 3.43e-62 3ulc-a1-m1-cA_3ulc-a1-m2-cA
4 3ulc-a1-m1-cA 100 100 0.9691 0.9400 0.9400 3.43e-62 3ulc-a1-m1-cA_3ulc-a1-m2-cA
5 4mug-a2-m2-cB 274 62 0.2062 0.0730 0.3226 0.042 4mug-a2-m2-cB_4mug-a2-m1-cA
6 4g5f-a1-m1-cB 272 62 0.2062 0.0735 0.3226 0.63 4g5f-a1-m1-cB_4g5f-a1-m1-cA
7 4yg8-a2-m6-cB 673 48 0.1443 0.0208 0.2917 1.9 4yg8-a2-m2-cB_4yg8-a2-m6-cB, 4yg8-a2-m5-cB_4yg8-a2-m6-cB
8 4yg8-a2-m5-cB 673 48 0.1443 0.0208 0.2917 1.9 4yg8-a2-m5-cB_4yg8-a2-m6-cB
9 4yg8-a2-m2-cB 673 48 0.1443 0.0208 0.2917 1.9 4yg8-a2-m2-cB_4yg8-a2-m6-cB
10 4g5f-a1-m1-cA 282 72 0.2165 0.0745 0.2917 4.6 4g5f-a1-m1-cB_4g5f-a1-m1-cA
11 4mug-a2-m1-cA 287 36 0.1340 0.0453 0.3611 7.0 4mug-a2-m2-cB_4mug-a2-m1-cA
12 2ntk-a1-m1-cD 202 72 0.1856 0.0891 0.2500 8.2 2ntk-a1-m1-cB_2ntk-a1-m1-cD, 2ntk-a1-m1-cC_2ntk-a1-m1-cD, 2ntk-a1-m1-cD_2ntk-a1-m1-cA
13 2ntk-a1-m1-cC 202 72 0.1856 0.0891 0.2500 8.2 2ntk-a1-m1-cC_2ntk-a1-m1-cD
14 2ntk-a1-m1-cB 202 72 0.1856 0.0891 0.2500 8.2 2ntk-a1-m1-cB_2ntk-a1-m1-cD
15 2ntk-a1-m1-cA 206 72 0.1856 0.0874 0.2500 8.5 2ntk-a1-m1-cD_2ntk-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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