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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
LAKGYRGQRSRSYRRAKEAVRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFI
NGLKKAGIELDRKILADAVRDPQAFEQVVNKVKEALQVQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ghj-a5-m1-cA 99 99 1.0000 1.0000 1.0000 3.37e-66 2ghj-a5-m1-cE_2ghj-a5-m1-cA
2 2ghj-a3-m1-cD 99 99 1.0000 1.0000 1.0000 3.37e-66 2ghj-a3-m1-cA_2ghj-a3-m1-cD
3 2ghj-a3-m1-cA 99 99 1.0000 1.0000 1.0000 3.37e-66 2ghj-a3-m1-cA_2ghj-a3-m1-cD
4 2ghj-a5-m1-cE 90 90 0.9091 1.0000 1.0000 1.39e-59 2ghj-a5-m1-cE_2ghj-a5-m1-cA
5 2ghj-a3-m1-cE 90 90 0.9091 1.0000 1.0000 1.39e-59 2ghj-a3-m1-cB_2ghj-a3-m1-cE
6 2ghj-a3-m1-cB 90 90 0.9091 1.0000 1.0000 1.39e-59 2ghj-a3-m1-cB_2ghj-a3-m1-cE
7 1ucr-a1-m1-cB 75 64 0.1717 0.2267 0.2656 0.97 1ucr-a1-m1-cA_1ucr-a1-m1-cB
8 1ucr-a1-m1-cA 74 64 0.1717 0.2297 0.2656 0.98 1ucr-a1-m1-cA_1ucr-a1-m1-cB
9 4nar-a2-m2-cA 411 47 0.1616 0.0389 0.3404 5.6 4nar-a2-m1-cA_4nar-a2-m2-cA
10 4nar-a2-m1-cA 411 47 0.1616 0.0389 0.3404 5.6 4nar-a2-m1-cA_4nar-a2-m2-cA
11 7zdy-a1-m1-cY 761 60 0.1818 0.0237 0.3000 7.0 7zdy-a1-m1-cY_7zdy-a1-m1-cW
12 7zdy-a1-m1-cW 763 60 0.1818 0.0236 0.3000 7.0 7zdy-a1-m1-cY_7zdy-a1-m1-cW
13 7dlw-a2-m1-cC 411 14 0.1010 0.0243 0.7143 9.5 7dlw-a2-m1-cC_7dlw-a2-m1-cD
14 7dlw-a2-m1-cD 414 14 0.1010 0.0242 0.7143 9.5 7dlw-a2-m1-cC_7dlw-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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