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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
LDAPSQIEVKDVTDTTALITWSMQLSQLEGIELTYGIKDVPGDRTTIDLTEDENQYSIGN
LKPDTEYEVSLISRRGDMSSNPAKETFTT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2rbl-a1-m1-cB 89 89 1.0000 1.0000 1.0000 6.40e-61 2rbl-a1-m1-cA_2rbl-a1-m1-cB
2 2rbl-a1-m1-cA 89 89 1.0000 1.0000 1.0000 6.40e-61 2rbl-a1-m1-cA_2rbl-a1-m1-cB
3 3b83-a5-m1-cD 91 89 0.4157 0.4066 0.4157 1.66e-20 3b83-a5-m1-cD_3b83-a5-m1-cH
4 3b83-a1-m8-cD 91 89 0.4157 0.4066 0.4157 1.66e-20 3b83-a1-m8-cD_3b83-a1-m8-cB
5 3b83-a1-m5-cD 91 89 0.4157 0.4066 0.4157 1.66e-20 3b83-a1-m5-cD_3b83-a1-m8-cH
6 3b83-a1-m8-cG 99 89 0.4157 0.3737 0.4157 1.73e-20 3b83-a1-m2-cA_3b83-a1-m8-cG, 3b83-a1-m2-cE_3b83-a1-m8-cG
7 3b83-a1-m4-cE 99 89 0.4157 0.3737 0.4157 1.73e-20 3b83-a1-m1-cC_3b83-a1-m4-cE, 3b83-a1-m4-cC_3b83-a1-m4-cE, 3b83-a1-m4-cF_3b83-a1-m4-cE
8 3b83-a1-m4-cC 99 89 0.4157 0.3737 0.4157 1.73e-20 3b83-a1-m4-cC_3b83-a1-m4-cE
9 3b83-a1-m2-cE 99 89 0.4157 0.3737 0.4157 1.73e-20 3b83-a1-m2-cE_3b83-a1-m8-cG
10 3b83-a1-m1-cC 99 89 0.4157 0.3737 0.4157 1.73e-20 3b83-a1-m1-cC_3b83-a1-m4-cE
11 3b83-a1-m8-cB 92 89 0.4157 0.4022 0.4157 1.84e-20 3b83-a1-m8-cB_3b83-a1-m2-cA, 3b83-a1-m8-cD_3b83-a1-m8-cB
12 3b83-a1-m4-cF 92 89 0.4157 0.4022 0.4157 1.84e-20 3b83-a1-m4-cF_3b83-a1-m4-cE
13 3b83-a1-m2-cA 95 89 0.4157 0.3895 0.4157 1.89e-20 3b83-a1-m2-cA_3b83-a1-m8-cG, 3b83-a1-m8-cB_3b83-a1-m2-cA
14 3b83-a5-m1-cH 94 89 0.4157 0.3936 0.4157 1.94e-20 3b83-a5-m1-cD_3b83-a5-m1-cH
15 3b83-a1-m8-cH 94 89 0.4157 0.3936 0.4157 1.94e-20 3b83-a1-m5-cD_3b83-a1-m8-cH
16 2ck2-a1-m1-cA 94 90 0.4045 0.3830 0.4000 4.96e-12 2ck2-a1-m1-cA_2ck2-a1-m1-cB
17 2ck2-a1-m1-cB 96 92 0.4157 0.3854 0.4022 6.36e-11 2ck2-a1-m1-cA_2ck2-a1-m1-cB
18 5fn8-a2-m3-cA 178 68 0.2584 0.1292 0.3382 3.11e-08 5fn8-a2-m1-cA_5fn8-a2-m3-cA
19 5fn8-a2-m1-cA 178 68 0.2584 0.1292 0.3382 3.11e-08 5fn8-a2-m1-cA_5fn8-a2-m3-cA
20 4lpu-a1-m1-cB 93 89 0.2809 0.2688 0.2809 1.46e-05 4lpu-a1-m1-cA_4lpu-a1-m1-cB
21 4lpu-a1-m1-cA 93 89 0.2809 0.2688 0.2809 1.46e-05 4lpu-a1-m1-cA_4lpu-a1-m1-cB
22 3t1w-a1-m2-cA 368 76 0.2135 0.0516 0.2500 3.20e-04 3t1w-a1-m1-cA_3t1w-a1-m2-cA
23 3t1w-a1-m1-cA 368 76 0.2135 0.0516 0.2500 3.20e-04 3t1w-a1-m1-cA_3t1w-a1-m2-cA
24 5myb-a1-m1-cB 191 89 0.2697 0.1257 0.2697 7.78e-04 5myb-a1-m1-cA_5myb-a1-m1-cB
25 5myb-a1-m1-cA 190 89 0.2697 0.1263 0.2697 7.91e-04 5myb-a1-m1-cA_5myb-a1-m1-cB
26 5j7k-a2-m1-cB 90 80 0.2584 0.2556 0.2875 0.007 5j7k-a2-m1-cF_5j7k-a2-m1-cB
27 2v5y-a1-m2-cA 564 50 0.2472 0.0390 0.4400 0.009 2v5y-a1-m1-cA_2v5y-a1-m2-cA
28 2v5y-a1-m1-cA 564 50 0.2472 0.0390 0.4400 0.009 2v5y-a1-m1-cA_2v5y-a1-m2-cA
29 5j7k-a2-m1-cG 85 83 0.3034 0.3176 0.3253 0.013 5j7k-a2-m1-cD_5j7k-a2-m1-cG
30 5utk-a1-m1-cA 289 91 0.2809 0.0865 0.2747 0.032 5utk-a1-m1-cB_5utk-a1-m1-cA
31 5utk-a1-m1-cB 280 89 0.2697 0.0857 0.2697 0.063 5utk-a1-m1-cB_5utk-a1-m1-cA
32 5j7k-a1-m1-cA 84 67 0.2022 0.2143 0.2687 0.11 5j7k-a1-m1-cC_5j7k-a1-m1-cA
33 5j7k-a2-m1-cF 79 67 0.2022 0.2278 0.2687 0.15 5j7k-a2-m1-cF_5j7k-a2-m1-cB
34 6bqo-a2-m2-cC 95 71 0.1798 0.1684 0.2254 0.19 6bqo-a2-m1-cC_6bqo-a2-m2-cC
35 6bqo-a2-m1-cC 95 71 0.1798 0.1684 0.2254 0.19 6bqo-a2-m1-cC_6bqo-a2-m2-cC
36 5j7k-a1-m1-cC 78 67 0.1910 0.2179 0.2537 0.65 5j7k-a1-m1-cC_5j7k-a1-m1-cA
37 4fei-a1-m2-cA 102 30 0.1461 0.1275 0.4333 0.95 4fei-a1-m1-cA_4fei-a1-m2-cA
38 4fei-a1-m1-cA 102 30 0.1461 0.1275 0.4333 0.95 4fei-a1-m1-cA_4fei-a1-m2-cA
39 4yfg-a1-m1-cB 481 85 0.2247 0.0416 0.2353 2.9 4yfg-a1-m1-cA_4yfg-a1-m1-cB
40 4yfg-a1-m1-cA 481 85 0.2247 0.0416 0.2353 2.9 4yfg-a1-m1-cA_4yfg-a1-m1-cB
41 5o6b-a1-m1-cB 507 46 0.1461 0.0256 0.2826 3.0 5o6b-a1-m1-cB_5o6b-a1-m1-cA
42 5o6b-a1-m1-cA 528 46 0.1461 0.0246 0.2826 3.2 5o6b-a1-m1-cB_5o6b-a1-m1-cA
43 5j7k-a2-m1-cD 54 16 0.1011 0.1667 0.5625 3.2 5j7k-a2-m1-cD_5j7k-a2-m1-cG
44 7mrm-a1-m1-cA 365 18 0.1011 0.0247 0.5000 4.0 7mrm-a1-m1-cB_7mrm-a1-m1-cA
45 7mrm-a1-m1-cB 360 18 0.1011 0.0250 0.5000 4.2 7mrm-a1-m1-cB_7mrm-a1-m1-cA
46 8a1f-a1-m1-cA 353 23 0.1236 0.0312 0.4783 9.4 8a1f-a1-m1-cB_8a1f-a1-m1-cA
47 8a1f-a1-m1-cB 352 23 0.1236 0.0312 0.4783 9.6 8a1f-a1-m1-cB_8a1f-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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