Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

HomodimerDB
>protein (length=60)
LKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Dimers
1 4om4-a1-m1-cE 60 60 1.0000 1.0000 1.0000 4.78e-38 4om4-a1-m1-cA_4om4-a1-m1-cE, 4om4-a1-m1-cC_4om4-a1-m1-cE, 4om4-a1-m1-cD_4om4-a1-m1-cE
2 4om4-a1-m1-cD 60 60 1.0000 1.0000 1.0000 4.78e-38 4om4-a1-m1-cD_4om4-a1-m1-cE
3 4om4-a1-m1-cC 60 60 1.0000 1.0000 1.0000 4.78e-38 4om4-a1-m1-cA_4om4-a1-m1-cC, 4om4-a1-m1-cC_4om4-a1-m1-cE
4 4om4-a1-m1-cB 60 60 1.0000 1.0000 1.0000 4.78e-38 4om4-a1-m1-cA_4om4-a1-m1-cB
5 4om4-a1-m1-cA 60 60 1.0000 1.0000 1.0000 4.78e-38 4om4-a1-m1-cA_4om4-a1-m1-cB, 4om4-a1-m1-cA_4om4-a1-m1-cC, 4om4-a1-m1-cA_4om4-a1-m1-cE
6 4om5-a1-m1-cC 60 59 0.9833 0.9833 1.0000 1.97e-37 4om5-a1-m1-cA_4om5-a1-m1-cC
7 4om5-a1-m1-cB 60 59 0.9833 0.9833 1.0000 1.97e-37 4om5-a1-m1-cA_4om5-a1-m1-cB
8 4om5-a1-m1-cA 60 59 0.9833 0.9833 1.0000 1.97e-37 4om5-a1-m1-cA_4om5-a1-m1-cB, 4om5-a1-m1-cA_4om5-a1-m1-cC
9 1xt3-a1-m2-cB 60 60 0.9000 0.9000 0.9000 1.46e-33 1xt3-a1-m1-cA_1xt3-a1-m2-cB
10 1xt3-a1-m1-cA 60 60 0.9000 0.9000 0.9000 1.46e-33 1xt3-a1-m1-cA_1xt3-a1-m2-cB
11 1cdt-a1-m1-cB 60 60 0.8000 0.8000 0.8000 3.34e-30 1cdt-a1-m1-cA_1cdt-a1-m1-cB
12 1cdt-a1-m1-cA 60 60 0.8000 0.8000 0.8000 3.34e-30 1cdt-a1-m1-cA_1cdt-a1-m1-cB
13 1tgx-a4-m15-cC 60 60 0.7333 0.7333 0.7333 1.02e-27 1tgx-a4-m14-cB_1tgx-a4-m15-cC
14 1tgx-a4-m14-cB 60 60 0.7333 0.7333 0.7333 1.02e-27 1tgx-a4-m14-cB_1tgx-a4-m15-cC
15 1tgx-a3-m9-cA 60 60 0.7333 0.7333 0.7333 1.02e-27 1tgx-a3-m10-cB_1tgx-a3-m9-cA
16 1tgx-a3-m10-cB 60 60 0.7333 0.7333 0.7333 1.02e-27 1tgx-a3-m10-cB_1tgx-a3-m9-cA
17 1tgx-a1-m4-cC 60 60 0.7333 0.7333 0.7333 1.02e-27 1tgx-a1-m4-cA_1tgx-a1-m4-cC
18 1tgx-a1-m4-cA 60 60 0.7333 0.7333 0.7333 1.02e-27 1tgx-a1-m4-cA_1tgx-a1-m4-cC
19 3vts-a1-m1-cB 61 61 0.6667 0.6557 0.6557 3.33e-22 3vts-a1-m1-cA_3vts-a1-m1-cB
20 3vts-a1-m1-cA 61 61 0.6667 0.6557 0.6557 3.33e-22 3vts-a1-m1-cA_3vts-a1-m1-cB
21 1kxi-a1-m1-cB 62 62 0.6667 0.6452 0.6452 4.18e-20 1kxi-a1-m1-cA_1kxi-a1-m1-cB
22 1kxi-a1-m1-cA 62 62 0.6667 0.6452 0.6452 4.18e-20 1kxi-a1-m1-cA_1kxi-a1-m1-cB
23 4lft-a1-m1-cA 64 62 0.4167 0.3906 0.4032 1.07e-06 4lft-a1-m1-cA_4lft-a1-m1-cB
24 4lft-a1-m1-cB 72 62 0.4167 0.3472 0.4032 1.22e-06 4lft-a1-m1-cA_4lft-a1-m1-cB
25 4zqy-a2-m1-cC 65 50 0.3667 0.3385 0.4400 1.30e-06 4zqy-a2-m1-cB_4zqy-a2-m1-cC
26 4zqy-a2-m1-cB 65 50 0.3667 0.3385 0.4400 1.30e-06 4zqy-a2-m1-cB_4zqy-a2-m1-cC
27 3neq-a3-m2-cA 66 65 0.4000 0.3636 0.3692 2.97e-06 3neq-a3-m1-cB_3neq-a3-m2-cA
28 3neq-a3-m1-cB 66 65 0.4000 0.3636 0.3692 2.97e-06 3neq-a3-m1-cB_3neq-a3-m2-cA
29 2abx-a1-m1-cB 74 59 0.3833 0.3108 0.3898 3.08e-06 2abx-a1-m1-cA_2abx-a1-m1-cB
30 2abx-a1-m1-cA 74 59 0.3833 0.3108 0.3898 3.08e-06 2abx-a1-m1-cA_2abx-a1-m1-cB
31 3hh7-a1-m1-cB 65 58 0.3167 0.2923 0.3276 3.34e-05 3hh7-a1-m1-cA_3hh7-a1-m1-cB
32 3hh7-a1-m1-cA 65 58 0.3167 0.2923 0.3276 3.34e-05 3hh7-a1-m1-cA_3hh7-a1-m1-cB
33 1ff4-a2-m3-cA 65 50 0.3167 0.2923 0.3800 4.59e-05 1ff4-a2-m1-cA_1ff4-a2-m3-cA
34 1ff4-a2-m1-cA 65 50 0.3167 0.2923 0.3800 4.59e-05 1ff4-a2-m1-cA_1ff4-a2-m3-cA
35 1ff4-a1-m2-cA 65 50 0.3167 0.2923 0.3800 4.59e-05 1ff4-a1-m1-cA_1ff4-a1-m2-cA
36 1ff4-a1-m1-cA 65 50 0.3167 0.2923 0.3800 4.59e-05 1ff4-a1-m1-cA_1ff4-a1-m2-cA
37 7c28-a1-m1-cB 59 55 0.3500 0.3559 0.3818 5.45e-05 7c28-a1-m1-cB_7c28-a1-m1-cA
38 7c28-a1-m1-cA 65 53 0.3333 0.3077 0.3774 6.86e-05 7c28-a1-m1-cB_7c28-a1-m1-cA
39 4do8-a3-m2-cB 66 51 0.3000 0.2727 0.3529 1.93e-04 4do8-a3-m1-cA_4do8-a3-m2-cB, 4do8-a3-m1-cB_4do8-a3-m2-cB, 4do8-a3-m2-cA_4do8-a3-m2-cB
40 4do8-a3-m2-cA 66 51 0.3000 0.2727 0.3529 1.93e-04 4do8-a3-m2-cA_4do8-a3-m2-cB
41 4do8-a3-m1-cB 66 51 0.3000 0.2727 0.3529 1.93e-04 4do8-a3-m1-cB_4do8-a3-m2-cB
42 4do8-a3-m1-cA 66 51 0.3000 0.2727 0.3529 1.93e-04 4do8-a3-m1-cA_4do8-a3-m2-cB
43 1v6p-a1-m1-cB 62 47 0.2833 0.2742 0.3617 0.003 1v6p-a1-m1-cA_1v6p-a1-m1-cB
44 1v6p-a1-m1-cA 62 47 0.2833 0.2742 0.3617 0.003 1v6p-a1-m1-cA_1v6p-a1-m1-cB
45 5xwe-a1-m1-cB 50 48 0.2833 0.3400 0.3542 0.005 5xwe-a1-m1-cB_5xwe-a1-m1-cA
46 5xwe-a1-m1-cA 51 48 0.2833 0.3333 0.3542 0.005 5xwe-a1-m1-cB_5xwe-a1-m1-cA
47 1qkd-a1-m1-cB 62 53 0.2833 0.2742 0.3208 0.021 1qkd-a1-m1-cA_1qkd-a1-m1-cB
48 1qkd-a1-m1-cA 62 53 0.2833 0.2742 0.3208 0.021 1qkd-a1-m1-cA_1qkd-a1-m1-cB
49 6zfm-a1-m1-cE 65 59 0.3500 0.3231 0.3559 0.054 6zfm-a1-m1-cE_6zfm-a1-m1-cA
50 4aea-a2-m2-cB 67 64 0.3500 0.3134 0.3281 0.36 4aea-a2-m1-cB_4aea-a2-m2-cB
51 4aea-a2-m1-cB 67 64 0.3500 0.3134 0.3281 0.36 4aea-a2-m1-cB_4aea-a2-m2-cB
52 6zfm-a1-m1-cD 71 64 0.3500 0.2958 0.3281 0.42 6zfm-a1-m1-cA_6zfm-a1-m1-cD
53 6zfm-a1-m1-cA 71 64 0.3500 0.2958 0.3281 0.42 6zfm-a1-m1-cA_6zfm-a1-m1-cD, 6zfm-a1-m1-cE_6zfm-a1-m1-cA
54 2ctx-a1-m2-cA 71 64 0.3500 0.2958 0.3281 0.42 2ctx-a1-m1-cA_2ctx-a1-m2-cA
55 2ctx-a1-m1-cA 71 64 0.3500 0.2958 0.3281 0.42 2ctx-a1-m1-cA_2ctx-a1-m2-cA
56 4o38-a1-m1-cB 272 53 0.2500 0.0551 0.2830 3.8 4o38-a1-m1-cA_4o38-a1-m1-cB
57 4o38-a1-m1-cA 263 53 0.2500 0.0570 0.2830 4.1 4o38-a1-m1-cA_4o38-a1-m1-cB

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600