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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=69)
LKEELHRAQKELKLKDEECERLSKVREQLEQELEELTASLFEEAHKMVREANMKQAASEK
QLKEARGKI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4li0-a2-m1-cD 69 69 1.0000 1.0000 1.0000 6.13e-41 4li0-a2-m1-cC_4li0-a2-m1-cD
2 4li0-a2-m1-cC 69 69 1.0000 1.0000 1.0000 6.13e-41 4li0-a2-m1-cC_4li0-a2-m1-cD
3 6f6p-a1-m1-cB 97 69 0.8696 0.6186 0.8696 6.37e-35 6f6p-a1-m1-cB_6f6p-a1-m1-cD
4 6f6p-a1-m1-cC 89 69 0.8696 0.6742 0.8696 6.50e-35 6f6p-a1-m1-cC_6f6p-a1-m1-cD
5 6f6p-a1-m1-cD 98 69 0.8696 0.6122 0.8696 6.56e-35 6f6p-a1-m1-cB_6f6p-a1-m1-cD, 6f6p-a1-m1-cC_6f6p-a1-m1-cD
6 4lhx-a2-m1-cC 72 68 0.8551 0.8194 0.8676 6.83e-34 4lhx-a2-m1-cD_4lhx-a2-m1-cC
7 4lhx-a2-m1-cD 71 67 0.8406 0.8169 0.8657 2.08e-33 4lhx-a2-m1-cD_4lhx-a2-m1-cC
8 2e7s-a1-m1-cA 112 70 0.3623 0.2232 0.3571 1.67e-04 2e7s-a1-m1-cA_2e7s-a1-m1-cB
9 2e7s-a3-m1-cF 122 70 0.3623 0.2049 0.3571 1.92e-04 2e7s-a3-m1-cE_2e7s-a3-m1-cF
10 2e7s-a3-m1-cE 122 70 0.3623 0.2049 0.3571 1.92e-04 2e7s-a3-m1-cE_2e7s-a3-m1-cF
11 2e7s-a1-m1-cB 119 70 0.3623 0.2101 0.3571 2.06e-04 2e7s-a1-m1-cA_2e7s-a1-m1-cB
12 2ocy-a2-m2-cB 146 61 0.3043 0.1438 0.3443 0.012 2ocy-a2-m1-cA_2ocy-a2-m2-cB, 2ocy-a2-m1-cB_2ocy-a2-m2-cB, 2ocy-a2-m2-cA_2ocy-a2-m2-cB
13 2ocy-a2-m2-cA 146 61 0.3043 0.1438 0.3443 0.012 2ocy-a2-m1-cA_2ocy-a2-m2-cA, 2ocy-a2-m2-cA_2ocy-a2-m2-cB
14 2ocy-a2-m1-cB 146 61 0.3043 0.1438 0.3443 0.012 2ocy-a2-m1-cB_2ocy-a2-m2-cB
15 2ocy-a2-m1-cA 146 61 0.3043 0.1438 0.3443 0.012 2ocy-a2-m1-cA_2ocy-a2-m2-cA, 2ocy-a2-m1-cA_2ocy-a2-m2-cB
16 4akg-a1-m1-cB 2650 65 0.2899 0.0075 0.3077 1.6 4akg-a1-m1-cA_4akg-a1-m1-cB
17 4akg-a1-m1-cA 2650 65 0.2899 0.0075 0.3077 1.6 4akg-a1-m1-cA_4akg-a1-m1-cB
18 4w8f-a3-m1-cA 2608 65 0.2899 0.0077 0.3077 1.9 4w8f-a3-m1-cA_4w8f-a3-m1-cB
19 4w8f-a3-m1-cB 2609 65 0.2899 0.0077 0.3077 2.0 4w8f-a3-m1-cA_4w8f-a3-m1-cB
20 4y5u-a1-m1-cB 437 47 0.2174 0.0343 0.3191 2.7 4y5u-a1-m1-cB_4y5u-a1-m1-cA
21 5ihf-a1-m1-cA 105 51 0.1884 0.1238 0.2549 3.3 5ihf-a1-m1-cA_5ihf-a1-m1-cB
22 4gpa-a1-m2-cA 379 29 0.1884 0.0343 0.4483 4.6 4gpa-a1-m1-cA_4gpa-a1-m2-cA
23 4gpa-a1-m1-cA 379 29 0.1884 0.0343 0.4483 4.6 4gpa-a1-m1-cA_4gpa-a1-m2-cA
24 2x0j-a1-m2-cA 294 26 0.1739 0.0408 0.4615 5.9 2x0j-a1-m2-cA_2x0j-a1-m1-cA
25 2x0j-a1-m1-cA 294 26 0.1739 0.0408 0.4615 5.9 2x0j-a1-m2-cA_2x0j-a1-m1-cA
26 6vjf-a2-m1-cC 365 46 0.2174 0.0411 0.3261 7.8 6vjf-a2-m1-cD_6vjf-a2-m1-cC
27 3ku5-a1-m3-cB 172 39 0.2029 0.0814 0.3590 8.0 3ku5-a1-m2-cB_3ku5-a1-m3-cB
28 3ku5-a1-m2-cB 172 39 0.2029 0.0814 0.3590 8.0 3ku5-a1-m2-cB_3ku5-a1-m3-cB
29 3o21-a2-m1-cC 375 27 0.1594 0.0293 0.4074 9.2 3o21-a2-m1-cC_3o21-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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