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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
LKGLRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDY
EQIKGVIEDGGVIHSVDEVVAGKIIVESV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3bpd-a2-m1-cM 90 89 1.0000 0.9889 1.0000 1.05e-57 3bpd-a2-m1-cN_3bpd-a2-m1-cM
2 3bpd-a2-m1-cN 89 89 1.0000 1.0000 1.0000 1.32e-57 3bpd-a2-m1-cN_3bpd-a2-m1-cM
3 2raq-a1-m2-cG 91 87 0.6067 0.5934 0.6207 1.84e-27 2raq-a1-m1-cE_2raq-a1-m2-cG, 2raq-a1-m2-cF_2raq-a1-m2-cG
4 2raq-a1-m2-cF 91 87 0.6067 0.5934 0.6207 1.84e-27 2raq-a1-m2-cF_2raq-a1-m2-cG
5 2raq-a1-m1-cE 91 87 0.6067 0.5934 0.6207 1.84e-27 2raq-a1-m1-cE_2raq-a1-m2-cG
6 2x3d-a1-m2-cG 90 87 0.4382 0.4333 0.4483 6.09e-17 2x3d-a1-m1-cA_2x3d-a1-m2-cG
7 2x3d-a1-m2-cB 90 87 0.4382 0.4333 0.4483 6.09e-17 2x3d-a1-m2-cA_2x3d-a1-m2-cB
8 2x3d-a1-m2-cA 90 87 0.4382 0.4333 0.4483 6.09e-17 2x3d-a1-m2-cA_2x3d-a1-m2-cB
9 2x3d-a1-m1-cA 90 87 0.4382 0.4333 0.4483 6.09e-17 2x3d-a1-m1-cA_2x3d-a1-m2-cG
10 1bxt-a1-m1-cB 224 67 0.2135 0.0848 0.2836 0.30 1bxt-a1-m1-cA_1bxt-a1-m1-cB
11 6oib-a1-m1-cB 406 44 0.1910 0.0419 0.3864 0.70 6oib-a1-m1-cB_6oib-a1-m1-cA
12 6oib-a1-m1-cA 407 44 0.1910 0.0418 0.3864 0.70 6oib-a1-m1-cB_6oib-a1-m1-cA
13 3gge-a2-m2-cC 95 48 0.2135 0.2000 0.3958 1.3 3gge-a2-m1-cB_3gge-a2-m2-cC, 3gge-a2-m2-cA_3gge-a2-m2-cC, 3gge-a2-m2-cB_3gge-a2-m2-cC
14 3gge-a2-m2-cA 95 48 0.2135 0.2000 0.3958 1.3 3gge-a2-m2-cA_3gge-a2-m2-cC, 3gge-a2-m2-cB_3gge-a2-m2-cA
15 3gge-a2-m2-cB 92 48 0.2135 0.2065 0.3958 1.4 3gge-a2-m2-cB_3gge-a2-m2-cA, 3gge-a2-m2-cB_3gge-a2-m2-cC
16 3gge-a2-m1-cB 92 48 0.2135 0.2065 0.3958 1.4 3gge-a2-m1-cB_3gge-a2-m2-cC
17 2evr-a1-m2-cA 220 41 0.1685 0.0682 0.3659 3.1 2evr-a1-m1-cA_2evr-a1-m2-cA
18 2evr-a1-m1-cA 220 41 0.1685 0.0682 0.3659 3.1 2evr-a1-m1-cA_2evr-a1-m2-cA
19 1bxt-a1-m1-cA 222 67 0.2247 0.0901 0.2985 3.3 1bxt-a1-m1-cA_1bxt-a1-m1-cB
20 3j09-a1-m1-cB 723 43 0.2022 0.0249 0.4186 4.6 3j09-a1-m1-cA_3j09-a1-m1-cB
21 3j09-a1-m1-cA 723 43 0.2022 0.0249 0.4186 4.6 3j09-a1-m1-cA_3j09-a1-m1-cB
22 3i4j-a2-m1-cD 379 23 0.0899 0.0211 0.3478 5.7 3i4j-a2-m1-cD_3i4j-a2-m1-cB
23 3i4j-a2-m1-cB 386 23 0.0899 0.0207 0.3478 5.7 3i4j-a2-m1-cD_3i4j-a2-m1-cB
24 3g8w-a2-m1-cD 158 49 0.2247 0.1266 0.4082 6.3 3g8w-a2-m1-cC_3g8w-a2-m1-cD
25 3g8w-a2-m1-cC 158 49 0.2247 0.1266 0.4082 6.3 3g8w-a2-m1-cC_3g8w-a2-m1-cD
26 5mog-a1-m1-cB 472 32 0.1348 0.0254 0.3750 6.3 5mog-a1-m1-cE_5mog-a1-m1-cB
27 5mog-a1-m1-cE 466 32 0.1348 0.0258 0.3750 6.4 5mog-a1-m1-cE_5mog-a1-m1-cB
28 5mog-a1-m1-cA 467 32 0.1348 0.0257 0.3750 6.4 5mog-a1-m1-cA_5mog-a1-m1-cC
29 5mog-a1-m1-cC 470 32 0.1348 0.0255 0.3750 6.4 5mog-a1-m1-cA_5mog-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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