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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=74)
LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMA
LDIEIATYRKLLEG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1gk4-a3-m1-cF 74 74 1.0000 1.0000 1.0000 8.08e-49 1gk4-a3-m1-cE_1gk4-a3-m1-cF
2 1gk4-a3-m1-cE 70 70 0.9459 1.0000 1.0000 1.41e-45 1gk4-a3-m1-cE_1gk4-a3-m1-cF
3 3tnu-a1-m2-cA 90 68 0.3649 0.3000 0.3971 2.24e-10 3tnu-a1-m1-cA_3tnu-a1-m2-cA
4 3tnu-a1-m1-cA 90 68 0.3649 0.3000 0.3971 2.24e-10 3tnu-a1-m1-cA_3tnu-a1-m2-cA
5 3v4q-a2-m2-cA 74 66 0.3649 0.3649 0.4091 3.12e-10 3v4q-a2-m1-cA_3v4q-a2-m2-cA
6 3v4q-a2-m1-cA 74 66 0.3649 0.3649 0.4091 3.12e-10 3v4q-a2-m1-cA_3v4q-a2-m2-cA
7 3tyy-a1-m1-cA 75 73 0.3919 0.3867 0.3973 6.71e-10 3tyy-a1-m1-cB_3tyy-a1-m1-cA
8 1gk6-a1-m1-cB 52 48 0.3649 0.5192 0.5625 9.11e-10 1gk6-a1-m1-cB_1gk6-a1-m1-cA
9 1gk6-a1-m1-cA 55 48 0.3649 0.4909 0.5625 9.11e-10 1gk6-a1-m1-cB_1gk6-a1-m1-cA
10 3tyy-a1-m1-cB 71 68 0.3784 0.3944 0.4118 1.53e-09 3tyy-a1-m1-cB_3tyy-a1-m1-cA
11 4zry-a1-m2-cA 110 69 0.3649 0.2455 0.3913 2.58e-09 4zry-a1-m1-cA_4zry-a1-m2-cA
12 4zry-a1-m1-cA 110 69 0.3649 0.2455 0.3913 2.58e-09 4zry-a1-m1-cA_4zry-a1-m2-cA
13 2xv5-a1-m1-cB 53 54 0.3784 0.5283 0.5185 3.22e-05 2xv5-a1-m1-cA_2xv5-a1-m1-cB
14 2xv5-a1-m1-cA 53 54 0.3784 0.5283 0.5185 3.22e-05 2xv5-a1-m1-cA_2xv5-a1-m1-cB
15 6p65-a1-m1-cE 557 27 0.1486 0.0197 0.4074 4.0 6p65-a1-m1-cE_6p65-a1-m1-cB
16 6p65-a1-m1-cB 557 27 0.1486 0.0197 0.4074 4.0 6p65-a1-m1-cE_6p65-a1-m1-cB
17 7bdv-a1-m1-cA 352 47 0.1892 0.0398 0.2979 4.3 7bdv-a1-m1-cB_7bdv-a1-m1-cA
18 3pkp-a6-m1-cL 284 49 0.2162 0.0563 0.3265 5.1 3pkp-a6-m1-cK_3pkp-a6-m1-cL
19 7bdv-a1-m1-cB 339 46 0.1892 0.0413 0.3043 6.8 7bdv-a1-m1-cB_7bdv-a1-m1-cA
20 7y9n-a1-m1-cA 212 55 0.2297 0.0802 0.3091 7.8 7y9n-a1-m1-cB_7y9n-a1-m1-cA
21 3wqy-a1-m1-cA 905 41 0.1757 0.0144 0.3171 8.4 3wqy-a1-m1-cA_3wqy-a1-m1-cB
22 3wqy-a1-m1-cB 905 41 0.1757 0.0144 0.3171 8.5 3wqy-a1-m1-cA_3wqy-a1-m1-cB
23 2yyv-a1-m1-cA 223 42 0.1486 0.0493 0.2619 8.8 2yyv-a1-m1-cA_2yyv-a1-m1-cB
24 6e2j-a2-m4-cA 107 44 0.1622 0.1121 0.2727 9.3 6e2j-a2-m1-cA_6e2j-a2-m4-cA, 6e2j-a2-m2-cA_6e2j-a2-m4-cA, 6e2j-a2-m3-cA_6e2j-a2-m4-cA
25 6e2j-a2-m3-cA 107 44 0.1622 0.1121 0.2727 9.3 6e2j-a2-m3-cA_6e2j-a2-m4-cA
26 6e2j-a2-m2-cA 107 44 0.1622 0.1121 0.2727 9.3 6e2j-a2-m2-cA_6e2j-a2-m4-cA
27 6e2j-a2-m1-cA 107 44 0.1622 0.1121 0.2727 9.3 6e2j-a2-m1-cA_6e2j-a2-m4-cA
28 1sjj-a1-m1-cB 863 34 0.1622 0.0139 0.3529 9.7 1sjj-a1-m1-cA_1sjj-a1-m1-cB
29 1sjj-a1-m1-cA 863 34 0.1622 0.0139 0.3529 9.7 1sjj-a1-m1-cA_1sjj-a1-m1-cB
30 2yyv-a1-m1-cB 224 42 0.1486 0.0491 0.2619 9.7 2yyv-a1-m1-cA_2yyv-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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