Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=55)
LLQAQALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWFPKSYVKLI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4iim-a1-m1-cA 57 55 1.0000 0.9649 1.0000 2.20e-36 4iim-a1-m1-cB_4iim-a1-m1-cA
2 4iim-a1-m1-cB 55 55 1.0000 1.0000 1.0000 3.25e-36 4iim-a1-m1-cB_4iim-a1-m1-cA
3 4iio-a1-m1-cA 63 55 0.7636 0.6667 0.7636 2.19e-27 4iio-a1-m1-cB_4iio-a1-m1-cA
4 4iio-a1-m1-cB 57 55 0.7636 0.7368 0.7636 2.65e-27 4iio-a1-m1-cB_4iio-a1-m1-cA
5 6a9c-a1-m1-cA 59 55 0.5091 0.4746 0.5091 5.58e-16 6a9c-a1-m1-cA_6a9c-a1-m1-cB
6 6a9c-a1-m1-cB 66 55 0.5091 0.4242 0.5091 5.80e-16 6a9c-a1-m1-cA_6a9c-a1-m1-cB
7 2d1x-a2-m1-cD 59 54 0.4000 0.3729 0.4074 3.31e-10 2d1x-a2-m1-cD_2d1x-a2-m1-cC
8 2d1x-a2-m1-cC 66 54 0.4000 0.3333 0.4074 4.24e-10 2d1x-a2-m1-cD_2d1x-a2-m1-cC
9 1wyx-a1-m1-cB 69 56 0.3818 0.3043 0.3750 1.20e-07 1wyx-a1-m1-cA_1wyx-a1-m1-cB
10 1wyx-a1-m1-cA 68 56 0.3818 0.3088 0.3750 1.20e-07 1wyx-a1-m1-cA_1wyx-a1-m1-cB
11 3nmz-a1-m1-cD 84 55 0.3818 0.2500 0.3818 1.26e-07 3nmz-a1-m1-cD_3nmz-a1-m1-cC
12 3nmz-a1-m1-cC 85 55 0.3818 0.2471 0.3818 1.30e-07 3nmz-a1-m1-cD_3nmz-a1-m1-cC
13 5sxp-a2-m1-cB 61 55 0.3455 0.3115 0.3455 2.27e-07 5sxp-a2-m1-cD_5sxp-a2-m1-cB
14 5sxp-a2-m1-cD 60 55 0.3455 0.3167 0.3455 2.42e-07 5sxp-a2-m1-cD_5sxp-a2-m1-cB
15 2esw-a3-m1-cB 57 55 0.3636 0.3509 0.3636 4.01e-07 2esw-a3-m1-cB_2esw-a3-m1-cA
16 2ak5-a1-m2-cB 64 55 0.3636 0.3125 0.3636 4.32e-07 2ak5-a1-m2-cA_2ak5-a1-m2-cB
17 2esw-a3-m1-cA 60 55 0.3636 0.3333 0.3636 4.42e-07 2esw-a3-m1-cB_2esw-a3-m1-cA
18 2ak5-a1-m2-cA 60 55 0.3636 0.3333 0.3636 5.04e-07 2ak5-a1-m2-cA_2ak5-a1-m2-cB
19 2p4r-a2-m2-cA 55 53 0.3455 0.3455 0.3585 7.65e-07 2p4r-a2-m1-cA_2p4r-a2-m2-cA
20 2p4r-a2-m1-cA 55 53 0.3455 0.3455 0.3585 7.65e-07 2p4r-a2-m1-cA_2p4r-a2-m2-cA
21 2sem-a1-m1-cB 59 50 0.3273 0.3051 0.3600 1.35e-06 2sem-a1-m1-cA_2sem-a1-m1-cB
22 2sem-a1-m1-cA 58 50 0.3273 0.3103 0.3600 1.36e-06 2sem-a1-m1-cA_2sem-a1-m1-cB
23 2d0n-a1-m1-cC 56 50 0.3273 0.3214 0.3600 3.82e-06 2d0n-a1-m1-cC_2d0n-a1-m1-cA
24 2d0n-a1-m1-cA 59 50 0.3273 0.3051 0.3600 4.03e-06 2d0n-a1-m1-cC_2d0n-a1-m1-cA
25 6gbu-a1-m1-cG 54 54 0.3091 0.3148 0.3148 9.44e-05 6gbu-a1-m1-cE_6gbu-a1-m1-cG
26 6cq7-a2-m2-cA 73 54 0.3273 0.2466 0.3333 2.34e-04 6cq7-a2-m1-cA_6cq7-a2-m2-cA
27 6cq7-a2-m1-cA 73 54 0.3273 0.2466 0.3333 2.34e-04 6cq7-a2-m1-cA_6cq7-a2-m2-cA
28 6aqb-a1-m2-cB 70 54 0.3273 0.2571 0.3333 2.44e-04 6aqb-a1-m1-cA_6aqb-a1-m2-cB
29 6aqb-a1-m1-cA 70 54 0.3273 0.2571 0.3333 2.44e-04 6aqb-a1-m1-cA_6aqb-a1-m2-cB
30 2iim-a1-m2-cA 62 49 0.2909 0.2581 0.3265 3.06e-04 2iim-a1-m1-cA_2iim-a1-m2-cA
31 2iim-a1-m1-cA 62 49 0.2909 0.2581 0.3265 3.06e-04 2iim-a1-m1-cA_2iim-a1-m2-cA
32 5k26-a1-m1-cA 77 54 0.3273 0.2338 0.3333 3.42e-04 5k26-a1-m1-cB_5k26-a1-m1-cA
33 5k26-a1-m1-cB 75 54 0.3273 0.2400 0.3333 3.44e-04 5k26-a1-m1-cB_5k26-a1-m1-cA
34 1ov3-a2-m2-cB 127 50 0.2182 0.0945 0.2400 4.44e-04 1ov3-a2-m2-cB_1ov3-a2-m2-cA
35 1bu1-a1-m1-cC 56 52 0.3091 0.3036 0.3269 4.74e-04 1bu1-a1-m1-cC_1bu1-a1-m1-cE
36 1bu1-a1-m1-cE 57 52 0.3091 0.2982 0.3269 4.84e-04 1bu1-a1-m1-cC_1bu1-a1-m1-cE
37 1ov3-a2-m2-cA 134 50 0.2182 0.0896 0.2400 5.05e-04 1ov3-a2-m1-cA_1ov3-a2-m2-cA, 1ov3-a2-m2-cB_1ov3-a2-m2-cA
38 1ov3-a2-m1-cA 134 50 0.2182 0.0896 0.2400 5.05e-04 1ov3-a2-m1-cA_1ov3-a2-m2-cA
39 7dpa-a1-m1-cD 1642 52 0.2909 0.0097 0.3077 6.96e-04 7dpa-a1-m1-cA_7dpa-a1-m1-cD
40 7dpa-a1-m1-cA 1642 52 0.2909 0.0097 0.3077 6.96e-04 7dpa-a1-m1-cA_7dpa-a1-m1-cD
41 1x27-a1-m1-cF 163 49 0.2909 0.0982 0.3265 0.001 1x27-a1-m1-cA_1x27-a1-m1-cF, 1x27-a1-m1-cD_1x27-a1-m1-cF
42 1x27-a1-m1-cD 163 49 0.2909 0.0982 0.3265 0.001 1x27-a1-m1-cD_1x27-a1-m1-cF
43 1x27-a1-m1-cA 163 49 0.2909 0.0982 0.3265 0.001 1x27-a1-m1-cA_1x27-a1-m1-cF
44 4u5w-a1-m1-cD 160 52 0.3091 0.1062 0.3269 0.002 4u5w-a1-m1-cD_4u5w-a1-m1-cB
45 4u5w-a1-m1-cB 163 52 0.3091 0.1043 0.3269 0.002 4u5w-a1-m1-cD_4u5w-a1-m1-cB
46 6gbu-a1-m1-cH 63 58 0.3455 0.3016 0.3276 0.002 6gbu-a1-m1-cH_6gbu-a1-m1-cD
47 6gbu-a1-m1-cD 64 58 0.3455 0.2969 0.3276 0.002 6gbu-a1-m1-cH_6gbu-a1-m1-cD
48 2hck-a1-m1-cB 437 49 0.3091 0.0389 0.3469 0.003 2hck-a1-m1-cA_2hck-a1-m1-cB
49 2hck-a1-m1-cA 437 49 0.3091 0.0389 0.3469 0.003 2hck-a1-m1-cA_2hck-a1-m1-cB
50 6gbu-a1-m1-cE 42 46 0.2727 0.3571 0.3261 0.003 6gbu-a1-m1-cE_6gbu-a1-m1-cG
51 1shf-a1-m2-cB 59 53 0.2727 0.2542 0.2830 0.006 1shf-a1-m2-cA_1shf-a1-m2-cB
52 1shf-a1-m2-cA 59 53 0.2727 0.2542 0.2830 0.006 1shf-a1-m2-cA_1shf-a1-m2-cB
53 1i07-a1-m1-cB 59 53 0.2364 0.2203 0.2453 0.014 1i07-a1-m1-cA_1i07-a1-m1-cB
54 1i07-a1-m1-cA 59 53 0.2364 0.2203 0.2453 0.014 1i07-a1-m1-cA_1i07-a1-m1-cB
55 7pvz-a1-m1-cB 60 50 0.2727 0.2500 0.3000 0.016 7pvz-a1-m1-cA_7pvz-a1-m1-cB
56 7pvz-a1-m1-cA 60 50 0.2727 0.2500 0.3000 0.016 7pvz-a1-m1-cA_7pvz-a1-m1-cB
57 1abq-a1-m2-cA 56 52 0.2727 0.2679 0.2885 0.018 1abq-a1-m1-cA_1abq-a1-m2-cA
58 1abq-a1-m1-cA 56 52 0.2727 0.2679 0.2885 0.018 1abq-a1-m1-cA_1abq-a1-m2-cA
59 2oaw-a5-m4-cD 65 57 0.3091 0.2615 0.2982 0.056 2oaw-a5-m1-cB_2oaw-a5-m4-cD, 2oaw-a5-m3-cC_2oaw-a5-m4-cD
60 2oaw-a5-m3-cC 65 57 0.3091 0.2615 0.2982 0.056 2oaw-a5-m3-cC_2oaw-a5-m4-cD
61 2oaw-a5-m1-cB 65 57 0.3091 0.2615 0.2982 0.056 2oaw-a5-m1-cB_2oaw-a5-m4-cD
62 4xi2-a1-m2-cA 421 54 0.2909 0.0380 0.2963 0.060 4xi2-a1-m1-cA_4xi2-a1-m2-cA
63 4xi2-a1-m1-cA 421 54 0.2909 0.0380 0.2963 0.060 4xi2-a1-m1-cA_4xi2-a1-m2-cA
64 2bzy-a1-m1-cB 62 19 0.2000 0.1774 0.5789 0.082 2bzy-a1-m1-cA_2bzy-a1-m1-cB
65 2bzy-a1-m1-cA 62 19 0.2000 0.1774 0.5789 0.082 2bzy-a1-m1-cA_2bzy-a1-m1-cB
66 1opl-a3-m2-cA 451 49 0.2727 0.0333 0.3061 0.089 1opl-a3-m1-cA_1opl-a3-m2-cA
67 1opl-a3-m1-cA 451 49 0.2727 0.0333 0.3061 0.089 1opl-a3-m1-cA_1opl-a3-m2-cA
68 2hda-a3-m3-cA 59 50 0.2545 0.2373 0.2800 0.20 2hda-a3-m2-cA_2hda-a3-m3-cA
69 2hda-a3-m2-cA 59 50 0.2545 0.2373 0.2800 0.20 2hda-a3-m2-cA_2hda-a3-m3-cA
70 2hda-a2-m6-cA 59 50 0.2545 0.2373 0.2800 0.20 2hda-a2-m2-cA_2hda-a2-m6-cA
71 2hda-a2-m2-cA 59 50 0.2545 0.2373 0.2800 0.20 2hda-a2-m2-cA_2hda-a2-m6-cA
72 7m4r-a1-m1-cA 360 37 0.2000 0.0306 0.2973 3.2 7m4r-a1-m1-cB_7m4r-a1-m1-cA
73 1xfb-a3-m1-cL 342 15 0.1636 0.0263 0.6000 3.3 1xfb-a3-m1-cI_1xfb-a3-m1-cL, 1xfb-a3-m1-cK_1xfb-a3-m1-cL
74 1xfb-a3-m1-cK 342 15 0.1636 0.0263 0.6000 3.3 1xfb-a3-m1-cK_1xfb-a3-m1-cL
75 1xfb-a3-m1-cI 342 15 0.1636 0.0263 0.6000 3.3 1xfb-a3-m1-cI_1xfb-a3-m1-cL
76 1jqq-a1-m1-cC 70 59 0.2727 0.2143 0.2542 4.3 1jqq-a1-m1-cC_1jqq-a1-m1-cD
77 7m4r-a1-m1-cB 270 37 0.2000 0.0407 0.2973 5.8 7m4r-a1-m1-cB_7m4r-a1-m1-cA

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600