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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=57)
LLQAQALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWFPKSYVKLISA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4iim-a1-m1-cA 57 57 1.0000 1.0000 1.0000 7.62e-38 4iim-a1-m1-cB_4iim-a1-m1-cA
2 4iim-a1-m1-cB 55 55 0.9649 1.0000 1.0000 2.28e-36 4iim-a1-m1-cB_4iim-a1-m1-cA
3 4iio-a1-m1-cA 63 57 0.7544 0.6825 0.7544 5.73e-28 4iio-a1-m1-cB_4iio-a1-m1-cA
4 4iio-a1-m1-cB 57 55 0.7368 0.7368 0.7636 2.53e-27 4iio-a1-m1-cB_4iio-a1-m1-cA
5 6a9c-a1-m1-cA 59 55 0.4912 0.4746 0.5091 4.97e-16 6a9c-a1-m1-cA_6a9c-a1-m1-cB
6 6a9c-a1-m1-cB 66 55 0.4912 0.4242 0.5091 5.46e-16 6a9c-a1-m1-cA_6a9c-a1-m1-cB
7 2d1x-a2-m1-cD 59 54 0.3860 0.3729 0.4074 3.75e-10 2d1x-a2-m1-cD_2d1x-a2-m1-cC
8 2d1x-a2-m1-cC 66 54 0.3860 0.3333 0.4074 4.50e-10 2d1x-a2-m1-cD_2d1x-a2-m1-cC
9 5sxp-a2-m1-cB 61 57 0.3509 0.3279 0.3509 5.85e-08 5sxp-a2-m1-cD_5sxp-a2-m1-cB
10 5sxp-a2-m1-cD 60 57 0.3509 0.3333 0.3509 6.31e-08 5sxp-a2-m1-cD_5sxp-a2-m1-cB
11 3nmz-a1-m1-cC 85 55 0.3684 0.2471 0.3818 1.18e-07 3nmz-a1-m1-cD_3nmz-a1-m1-cC
12 1wyx-a1-m1-cA 68 56 0.3684 0.3088 0.3750 1.23e-07 1wyx-a1-m1-cA_1wyx-a1-m1-cB
13 3nmz-a1-m1-cD 84 55 0.3684 0.2500 0.3818 1.25e-07 3nmz-a1-m1-cD_3nmz-a1-m1-cC
14 1wyx-a1-m1-cB 69 56 0.3684 0.3043 0.3750 1.40e-07 1wyx-a1-m1-cA_1wyx-a1-m1-cB
15 2ak5-a1-m2-cB 64 55 0.3509 0.3125 0.3636 4.05e-07 2ak5-a1-m2-cA_2ak5-a1-m2-cB
16 2esw-a3-m1-cB 57 55 0.3509 0.3509 0.3636 4.10e-07 2esw-a3-m1-cB_2esw-a3-m1-cA
17 2esw-a3-m1-cA 60 55 0.3509 0.3333 0.3636 4.52e-07 2esw-a3-m1-cB_2esw-a3-m1-cA
18 2ak5-a1-m2-cA 60 55 0.3509 0.3333 0.3636 5.33e-07 2ak5-a1-m2-cA_2ak5-a1-m2-cB
19 2p4r-a2-m2-cA 55 53 0.3333 0.3455 0.3585 8.28e-07 2p4r-a2-m1-cA_2p4r-a2-m2-cA
20 2p4r-a2-m1-cA 55 53 0.3333 0.3455 0.3585 8.28e-07 2p4r-a2-m1-cA_2p4r-a2-m2-cA
21 2sem-a1-m1-cA 58 50 0.3158 0.3103 0.3600 1.31e-06 2sem-a1-m1-cA_2sem-a1-m1-cB
22 2sem-a1-m1-cB 59 50 0.3158 0.3051 0.3600 1.37e-06 2sem-a1-m1-cA_2sem-a1-m1-cB
23 2d0n-a1-m1-cA 59 50 0.3158 0.3051 0.3600 4.08e-06 2d0n-a1-m1-cC_2d0n-a1-m1-cA
24 2d0n-a1-m1-cC 56 50 0.3158 0.3214 0.3600 4.41e-06 2d0n-a1-m1-cC_2d0n-a1-m1-cA
25 6gbu-a1-m1-cG 54 54 0.2982 0.3148 0.3148 9.76e-05 6gbu-a1-m1-cE_6gbu-a1-m1-cG
26 6cq7-a2-m2-cA 73 54 0.3158 0.2466 0.3333 2.35e-04 6cq7-a2-m1-cA_6cq7-a2-m2-cA
27 6cq7-a2-m1-cA 73 54 0.3158 0.2466 0.3333 2.35e-04 6cq7-a2-m1-cA_6cq7-a2-m2-cA
28 6aqb-a1-m2-cB 70 54 0.3158 0.2571 0.3333 2.66e-04 6aqb-a1-m1-cA_6aqb-a1-m2-cB
29 6aqb-a1-m1-cA 70 54 0.3158 0.2571 0.3333 2.66e-04 6aqb-a1-m1-cA_6aqb-a1-m2-cB
30 2iim-a1-m2-cA 62 49 0.2807 0.2581 0.3265 3.26e-04 2iim-a1-m1-cA_2iim-a1-m2-cA
31 2iim-a1-m1-cA 62 49 0.2807 0.2581 0.3265 3.26e-04 2iim-a1-m1-cA_2iim-a1-m2-cA
32 5k26-a1-m1-cB 75 54 0.3158 0.2400 0.3333 3.60e-04 5k26-a1-m1-cB_5k26-a1-m1-cA
33 5k26-a1-m1-cA 77 54 0.3158 0.2338 0.3333 3.69e-04 5k26-a1-m1-cB_5k26-a1-m1-cA
34 6gbu-a1-m1-cH 63 59 0.3509 0.3175 0.3390 4.57e-04 6gbu-a1-m1-cH_6gbu-a1-m1-cD
35 6gbu-a1-m1-cD 64 59 0.3509 0.3125 0.3390 5.19e-04 6gbu-a1-m1-cH_6gbu-a1-m1-cD
36 1bu1-a1-m1-cE 57 52 0.2982 0.2982 0.3269 5.57e-04 1bu1-a1-m1-cC_1bu1-a1-m1-cE
37 1bu1-a1-m1-cC 56 52 0.2982 0.3036 0.3269 5.64e-04 1bu1-a1-m1-cC_1bu1-a1-m1-cE
38 1ov3-a2-m2-cA 134 54 0.2105 0.0896 0.2222 5.75e-04 1ov3-a2-m1-cA_1ov3-a2-m2-cA, 1ov3-a2-m2-cB_1ov3-a2-m2-cA
39 1ov3-a2-m1-cA 134 54 0.2105 0.0896 0.2222 5.75e-04 1ov3-a2-m1-cA_1ov3-a2-m2-cA
40 1ov3-a2-m2-cB 127 54 0.2105 0.0945 0.2222 5.98e-04 1ov3-a2-m2-cB_1ov3-a2-m2-cA
41 7dpa-a1-m1-cD 1642 55 0.2982 0.0104 0.3091 7.59e-04 7dpa-a1-m1-cA_7dpa-a1-m1-cD
42 7dpa-a1-m1-cA 1642 55 0.2982 0.0104 0.3091 7.59e-04 7dpa-a1-m1-cA_7dpa-a1-m1-cD
43 1x27-a1-m1-cF 163 49 0.2807 0.0982 0.3265 0.001 1x27-a1-m1-cA_1x27-a1-m1-cF, 1x27-a1-m1-cD_1x27-a1-m1-cF
44 1x27-a1-m1-cD 163 49 0.2807 0.0982 0.3265 0.001 1x27-a1-m1-cD_1x27-a1-m1-cF
45 1x27-a1-m1-cA 163 49 0.2807 0.0982 0.3265 0.001 1x27-a1-m1-cA_1x27-a1-m1-cF
46 4u5w-a1-m1-cD 160 54 0.2982 0.1062 0.3148 0.001 4u5w-a1-m1-cD_4u5w-a1-m1-cB
47 4u5w-a1-m1-cB 163 54 0.2982 0.1043 0.3148 0.001 4u5w-a1-m1-cD_4u5w-a1-m1-cB
48 2hck-a1-m1-cB 437 54 0.2982 0.0389 0.3148 0.003 2hck-a1-m1-cA_2hck-a1-m1-cB
49 2hck-a1-m1-cA 437 54 0.2982 0.0389 0.3148 0.003 2hck-a1-m1-cA_2hck-a1-m1-cB
50 6gbu-a1-m1-cE 42 46 0.2632 0.3571 0.3261 0.003 6gbu-a1-m1-cE_6gbu-a1-m1-cG
51 1shf-a1-m2-cB 59 53 0.2632 0.2542 0.2830 0.007 1shf-a1-m2-cA_1shf-a1-m2-cB
52 1shf-a1-m2-cA 59 53 0.2632 0.2542 0.2830 0.007 1shf-a1-m2-cA_1shf-a1-m2-cB
53 7pvz-a1-m1-cB 60 50 0.2632 0.2500 0.3000 0.017 7pvz-a1-m1-cA_7pvz-a1-m1-cB
54 7pvz-a1-m1-cA 60 50 0.2632 0.2500 0.3000 0.017 7pvz-a1-m1-cA_7pvz-a1-m1-cB
55 1i07-a1-m1-cB 59 53 0.2281 0.2203 0.2453 0.017 1i07-a1-m1-cA_1i07-a1-m1-cB
56 1i07-a1-m1-cA 59 53 0.2281 0.2203 0.2453 0.017 1i07-a1-m1-cA_1i07-a1-m1-cB
57 1abq-a1-m2-cA 56 53 0.2632 0.2679 0.2830 0.018 1abq-a1-m1-cA_1abq-a1-m2-cA
58 1abq-a1-m1-cA 56 53 0.2632 0.2679 0.2830 0.018 1abq-a1-m1-cA_1abq-a1-m2-cA
59 2oaw-a5-m4-cD 65 57 0.2982 0.2615 0.2982 0.057 2oaw-a5-m1-cB_2oaw-a5-m4-cD, 2oaw-a5-m3-cC_2oaw-a5-m4-cD
60 2oaw-a5-m3-cC 65 57 0.2982 0.2615 0.2982 0.057 2oaw-a5-m3-cC_2oaw-a5-m4-cD
61 2oaw-a5-m1-cB 65 57 0.2982 0.2615 0.2982 0.057 2oaw-a5-m1-cB_2oaw-a5-m4-cD
62 4xi2-a1-m2-cA 421 54 0.2807 0.0380 0.2963 0.060 4xi2-a1-m1-cA_4xi2-a1-m2-cA
63 4xi2-a1-m1-cA 421 54 0.2807 0.0380 0.2963 0.060 4xi2-a1-m1-cA_4xi2-a1-m2-cA
64 1opl-a3-m2-cA 451 54 0.2632 0.0333 0.2778 0.076 1opl-a3-m1-cA_1opl-a3-m2-cA
65 1opl-a3-m1-cA 451 54 0.2632 0.0333 0.2778 0.076 1opl-a3-m1-cA_1opl-a3-m2-cA
66 2bzy-a1-m1-cB 62 19 0.1930 0.1774 0.5789 0.076 2bzy-a1-m1-cA_2bzy-a1-m1-cB
67 2bzy-a1-m1-cA 62 19 0.1930 0.1774 0.5789 0.076 2bzy-a1-m1-cA_2bzy-a1-m1-cB
68 2hda-a3-m3-cA 59 50 0.2456 0.2373 0.2800 0.21 2hda-a3-m2-cA_2hda-a3-m3-cA
69 2hda-a3-m2-cA 59 50 0.2456 0.2373 0.2800 0.21 2hda-a3-m2-cA_2hda-a3-m3-cA
70 2hda-a2-m6-cA 59 50 0.2456 0.2373 0.2800 0.21 2hda-a2-m2-cA_2hda-a2-m6-cA
71 2hda-a2-m2-cA 59 50 0.2456 0.2373 0.2800 0.21 2hda-a2-m2-cA_2hda-a2-m6-cA
72 7m4r-a1-m1-cA 360 37 0.1930 0.0306 0.2973 3.2 7m4r-a1-m1-cB_7m4r-a1-m1-cA
73 1xfb-a3-m1-cL 342 15 0.1579 0.0263 0.6000 3.5 1xfb-a3-m1-cI_1xfb-a3-m1-cL, 1xfb-a3-m1-cK_1xfb-a3-m1-cL
74 1xfb-a3-m1-cK 342 15 0.1579 0.0263 0.6000 3.5 1xfb-a3-m1-cK_1xfb-a3-m1-cL
75 1xfb-a3-m1-cI 342 15 0.1579 0.0263 0.6000 3.5 1xfb-a3-m1-cI_1xfb-a3-m1-cL
76 1jqq-a1-m1-cC 70 59 0.2632 0.2143 0.2542 4.2 1jqq-a1-m1-cC_1jqq-a1-m1-cD
77 7m4r-a1-m1-cB 270 37 0.1930 0.0407 0.2973 5.4 7m4r-a1-m1-cB_7m4r-a1-m1-cA
78 6kbw-a1-m1-cB 446 33 0.1579 0.0202 0.2727 9.3 6kbw-a1-m1-cA_6kbw-a1-m1-cB
79 6kbw-a1-m1-cA 446 33 0.1579 0.0202 0.2727 9.3 6kbw-a1-m1-cA_6kbw-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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