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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
LMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKEL
REGTENERSRQKYAEEEMEQVREALRKAEKEL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4o9b-a4-m3-cC 92 92 1.0000 1.0000 1.0000 2.78e-57 4o9b-a4-m1-cD_4o9b-a4-m3-cC
2 4o9b-a2-m1-cC 92 92 1.0000 1.0000 1.0000 2.78e-57 4o9b-a2-m1-cB_4o9b-a2-m1-cC
3 4o9b-a5-m3-cB 90 89 0.9674 0.9889 1.0000 4.70e-55 4o9b-a5-m1-cD_4o9b-a5-m3-cB
4 4o9b-a2-m1-cB 90 89 0.9674 0.9889 1.0000 4.70e-55 4o9b-a2-m1-cB_4o9b-a2-m1-cC
5 4o9b-a5-m1-cD 89 88 0.9565 0.9888 1.0000 4.73e-54 4o9b-a5-m1-cA_4o9b-a5-m1-cD, 4o9b-a5-m1-cD_4o9b-a5-m3-cB
6 4o9b-a5-m1-cA 89 88 0.9565 0.9888 1.0000 4.73e-54 4o9b-a5-m1-cA_4o9b-a5-m1-cD
7 4o9b-a4-m1-cD 89 88 0.9565 0.9888 1.0000 4.73e-54 4o9b-a4-m1-cD_4o9b-a4-m3-cC
8 2mak-a1-m1-cC 82 30 0.2609 0.2927 0.8000 4.89e-08 2mak-a1-m1-cA_2mak-a1-m1-cC
9 2mak-a1-m1-cA 82 30 0.2609 0.2927 0.8000 4.89e-08 2mak-a1-m1-cA_2mak-a1-m1-cC
10 2maj-a1-m1-cC 82 30 0.2609 0.2927 0.8000 4.89e-08 2maj-a1-m1-cA_2maj-a1-m1-cC
11 2maj-a1-m1-cA 82 30 0.2609 0.2927 0.8000 4.89e-08 2maj-a1-m1-cA_2maj-a1-m1-cC
12 3m5u-a1-m1-cB 346 61 0.2174 0.0578 0.3279 0.60 3m5u-a1-m1-cA_3m5u-a1-m1-cB
13 3m5u-a1-m1-cA 346 61 0.2174 0.0578 0.3279 0.60 3m5u-a1-m1-cA_3m5u-a1-m1-cB
14 5fif-a1-m1-cF 506 82 0.2826 0.0514 0.3171 1.5 5fif-a1-m1-cE_5fif-a1-m1-cF, 5fif-a1-m1-cF_5fif-a1-m1-cA, 5fif-a1-m1-cF_5fif-a1-m1-cB
15 5fif-a1-m1-cE 503 72 0.2500 0.0457 0.3194 1.7 5fif-a1-m1-cE_5fif-a1-m1-cF
16 5fif-a1-m1-cA 507 72 0.2500 0.0454 0.3194 1.7 5fif-a1-m1-cF_5fif-a1-m1-cA
17 5fif-a1-m1-cB 519 82 0.2826 0.0501 0.3171 1.7 5fif-a1-m1-cF_5fif-a1-m1-cB
18 2pgn-a1-m2-cB 587 68 0.2391 0.0375 0.3235 3.1 2pgn-a1-m1-cA_2pgn-a1-m2-cB, 2pgn-a1-m1-cB_2pgn-a1-m2-cB, 2pgn-a1-m2-cA_2pgn-a1-m2-cB
19 2pgn-a1-m2-cA 587 68 0.2391 0.0375 0.3235 3.1 2pgn-a1-m2-cA_2pgn-a1-m2-cB
20 2pgn-a1-m1-cB 587 68 0.2391 0.0375 0.3235 3.1 2pgn-a1-m1-cB_2pgn-a1-m2-cB
21 2pgn-a1-m1-cA 587 68 0.2391 0.0375 0.3235 3.1 2pgn-a1-m1-cA_2pgn-a1-m2-cB
22 3iav-a2-m1-cB 521 49 0.1739 0.0307 0.3265 7.1 3iav-a2-m1-cA_3iav-a2-m1-cB
23 3iav-a2-m1-cA 521 49 0.1739 0.0307 0.3265 7.1 3iav-a2-m1-cA_3iav-a2-m1-cB
24 3iav-a1-m3-cB 521 49 0.1739 0.0307 0.3265 7.1 3iav-a1-m2-cB_3iav-a1-m3-cB
25 3iav-a1-m2-cB 521 49 0.1739 0.0307 0.3265 7.1 3iav-a1-m2-cB_3iav-a1-m3-cB
26 8glv-a1-m1-cLP 543 50 0.2174 0.0368 0.4000 9.4 8glv-a1-m1-cLQ_8glv-a1-m1-cLP
27 8glv-a1-m1-cLQ 537 50 0.2174 0.0372 0.4000 9.7 8glv-a1-m1-cLQ_8glv-a1-m1-cLP

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Reference:
Jacob Schwartz et al.

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