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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
LMRILPISTIKGKLNEFVDAVSSTQDQITITKNGAPAAVLVGADEWESLQETLYWLAQPG
IRESIAEADADIASGRTYGEDEIRAEFGVPRR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3g5o-a1-m1-cD 92 92 1.0000 1.0000 1.0000 2.36e-63 3g5o-a1-m1-cA_3g5o-a1-m1-cD
2 3g5o-a1-m1-cA 92 92 1.0000 1.0000 1.0000 2.36e-63 3g5o-a1-m1-cA_3g5o-a1-m1-cD
3 6l8e-a1-m1-cA 83 80 0.2391 0.2651 0.2750 4.23e-06 6l8e-a1-m1-cB_6l8e-a1-m1-cA
4 2odk-a3-m4-cD 51 48 0.1957 0.3529 0.3750 1.83e-04 2odk-a3-m2-cB_2odk-a3-m4-cD, 2odk-a3-m4-cC_2odk-a3-m4-cD
5 2odk-a3-m4-cC 50 48 0.1957 0.3600 0.3750 2.00e-04 2odk-a3-m4-cC_2odk-a3-m4-cD
6 2odk-a3-m2-cB 50 48 0.1957 0.3600 0.3750 2.00e-04 2odk-a3-m2-cB_2odk-a3-m4-cD
7 7v6w-a2-m1-cJ 85 67 0.2391 0.2588 0.3284 7.98e-04 7v6w-a2-m1-cI_7v6w-a2-m1-cJ
8 2a6q-a3-m1-cC 86 82 0.2391 0.2558 0.2683 0.002 2a6q-a3-m1-cD_2a6q-a3-m1-cC
9 2a6q-a3-m1-cA 86 82 0.2391 0.2558 0.2683 0.002 2a6q-a3-m1-cD_2a6q-a3-m1-cA
10 3d55-a4-m2-cB 84 80 0.2717 0.2976 0.3125 0.004 3d55-a4-m2-cB_3d55-a4-m1-cC
11 3d55-a4-m1-cC 86 80 0.2717 0.2907 0.3125 0.005 3d55-a4-m1-cA_3d55-a4-m1-cC, 3d55-a4-m2-cB_3d55-a4-m1-cC
12 3cto-a5-m5-cC 86 80 0.2717 0.2907 0.3125 0.005 3cto-a5-m1-cD_3cto-a5-m5-cC
13 3oei-a3-m1-cJ 86 80 0.2609 0.2791 0.3000 0.005 3oei-a3-m1-cI_3oei-a3-m1-cJ
14 7v6w-a2-m1-cI 56 40 0.1522 0.2500 0.3500 0.005 7v6w-a2-m1-cI_7v6w-a2-m1-cJ, 7v6w-a2-m1-cI_7v6w-a2-m1-cK
15 3cto-a7-m1-cB 83 80 0.2609 0.2892 0.3000 0.005 3cto-a7-m1-cA_3cto-a7-m1-cB
16 3cto-a6-m1-cB 83 80 0.2609 0.2892 0.3000 0.005 3cto-a6-m5-cA_3cto-a6-m1-cB
17 7v6w-a2-m1-cK 58 40 0.1522 0.2414 0.3500 0.006 7v6w-a2-m1-cI_7v6w-a2-m1-cK
18 3oei-a3-m1-cI 83 83 0.2609 0.2892 0.2892 0.016 3oei-a3-m1-cI_3oei-a3-m1-cJ
19 3d55-a4-m1-cA 68 61 0.1957 0.2647 0.2951 0.019 3d55-a4-m1-cA_3d55-a4-m1-cC
20 3cto-a7-m1-cA 68 61 0.1957 0.2647 0.2951 0.019 3cto-a7-m1-cA_3cto-a7-m1-cB, 3cto-a7-m1-cD_3cto-a7-m1-cA
21 3cto-a6-m5-cA 68 61 0.1957 0.2647 0.2951 0.019 3cto-a6-m5-cA_3cto-a6-m1-cB
22 3cto-a7-m1-cD 65 61 0.1957 0.2769 0.2951 0.021 3cto-a7-m1-cD_3cto-a7-m1-cA
23 3cto-a5-m1-cD 65 61 0.1957 0.2769 0.2951 0.021 3cto-a5-m1-cD_3cto-a5-m5-cC
24 2a6q-a3-m1-cD 58 55 0.1848 0.2931 0.3091 0.033 2a6q-a3-m1-cB_2a6q-a3-m1-cD, 2a6q-a3-m1-cD_2a6q-a3-m1-cA, 2a6q-a3-m1-cD_2a6q-a3-m1-cC
25 2a6q-a3-m1-cB 58 55 0.1848 0.2931 0.3091 0.033 2a6q-a3-m1-cB_2a6q-a3-m1-cD
26 6l8e-a2-m1-cJ 59 59 0.1630 0.2542 0.2542 0.094 6l8e-a2-m1-cL_6l8e-a2-m1-cJ
27 6l8e-a1-m1-cB 54 53 0.1522 0.2593 0.2642 0.61 6l8e-a1-m1-cB_6l8e-a1-m1-cA
28 6l8e-a2-m1-cL 57 53 0.1522 0.2456 0.2642 0.74 6l8e-a2-m1-cL_6l8e-a2-m1-cJ
29 5u8m-a1-m1-cB 229 64 0.2065 0.0830 0.2969 0.84 5u8m-a1-m1-cA_5u8m-a1-m1-cB
30 5u8m-a1-m1-cA 229 64 0.2065 0.0830 0.2969 0.84 5u8m-a1-m1-cA_5u8m-a1-m1-cB
31 2v9u-a1-m1-cC 132 33 0.1413 0.0985 0.3939 9.9 2v9u-a1-m1-cB_2v9u-a1-m1-cC
32 2v9u-a1-m1-cB 132 33 0.1413 0.0985 0.3939 9.9 2v9u-a1-m1-cB_2v9u-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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