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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=73)
LMVVPLSEMGPGDKGIVVNILNARQKLVSMGLTPGATIQVLESHPMGPIIISVGGVRFAI
GKGLAGRVMVRKL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3e19-a4-m1-cD 73 73 1.0000 1.0000 1.0000 8.41e-46 3e19-a4-m1-cD_3e19-a4-m1-cB
2 3e19-a4-m1-cC 77 76 1.0000 0.9481 0.9605 2.07e-43 3e19-a4-m1-cB_3e19-a4-m1-cC
3 3e19-a4-m1-cB 75 75 0.9863 0.9600 0.9600 8.80e-43 3e19-a4-m1-cA_3e19-a4-m1-cB, 3e19-a4-m1-cB_3e19-a4-m1-cC, 3e19-a4-m1-cD_3e19-a4-m1-cB
4 3e19-a4-m1-cA 74 76 0.9726 0.9595 0.9342 3.72e-39 3e19-a4-m1-cA_3e19-a4-m1-cB
5 3e19-a3-m3-cA 74 76 0.9726 0.9595 0.9342 3.72e-39 3e19-a3-m1-cA_3e19-a3-m3-cA
6 3e19-a3-m1-cA 74 76 0.9726 0.9595 0.9342 3.72e-39 3e19-a3-m1-cA_3e19-a3-m3-cA
7 3mhx-a1-m1-cA 85 48 0.2055 0.1765 0.3125 0.20 3mhx-a1-m1-cB_3mhx-a1-m1-cA
8 5eft-a1-m1-cH 255 51 0.2055 0.0588 0.2941 2.1 5eft-a1-m1-cD_5eft-a1-m1-cH
9 5eft-a1-m1-cF 255 51 0.2055 0.0588 0.2941 2.1 5eft-a1-m1-cB_5eft-a1-m1-cF
10 5eft-a1-m1-cD 255 51 0.2055 0.0588 0.2941 2.1 5eft-a1-m1-cD_5eft-a1-m1-cH
11 5eft-a1-m1-cB 255 51 0.2055 0.0588 0.2941 2.1 5eft-a1-m1-cB_5eft-a1-m1-cF
12 2zmf-a1-m1-cB 167 21 0.1233 0.0539 0.4286 6.9 2zmf-a1-m1-cB_2zmf-a1-m1-cA
13 2zmf-a1-m1-cA 172 21 0.1233 0.0523 0.4286 7.0 2zmf-a1-m1-cB_2zmf-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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