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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
LPQPSLSLHPSQGVSLGDTVTLRCHLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAV
TNLEDAGTYQCRYQVSEPLWTSNQSDPVELVLT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2vsd-a1-m2-cA 93 93 1.0000 1.0000 1.0000 2.04e-66 2vsd-a1-m1-cA_2vsd-a1-m2-cA
2 2vsd-a1-m1-cA 93 93 1.0000 1.0000 1.0000 2.04e-66 2vsd-a1-m1-cA_2vsd-a1-m2-cA
3 6grs-a1-m1-cB 587 93 0.3548 0.0562 0.3548 1.61e-07 6grs-a1-m1-cA_6grs-a1-m1-cB
4 6grs-a1-m1-cB 587 94 0.3441 0.0545 0.3404 3.73e-05 6grs-a1-m1-cA_6grs-a1-m1-cB
5 6grs-a1-m1-cA 578 90 0.3333 0.0536 0.3444 8.44e-07 6grs-a1-m1-cA_6grs-a1-m1-cB
6 6grs-a1-m1-cA 578 89 0.3011 0.0484 0.3146 0.051 6grs-a1-m1-cA_6grs-a1-m1-cB
7 3p2t-a2-m2-cA 194 108 0.3656 0.1753 0.3148 1.02e-06 3p2t-a2-m1-cA_3p2t-a2-m2-cA
8 3p2t-a2-m2-cA 194 102 0.3118 0.1495 0.2843 0.011 3p2t-a2-m1-cA_3p2t-a2-m2-cA
9 3p2t-a2-m1-cA 194 108 0.3656 0.1753 0.3148 1.02e-06 3p2t-a2-m1-cA_3p2t-a2-m2-cA
10 3p2t-a2-m1-cA 194 102 0.3118 0.1495 0.2843 0.011 3p2t-a2-m1-cA_3p2t-a2-m2-cA
11 2otp-a1-m1-cA 193 93 0.3011 0.1451 0.3011 1.92e-06 2otp-a1-m1-cA_2otp-a1-m1-cB
12 2otp-a1-m1-cA 193 22 0.1290 0.0622 0.5455 6.0 2otp-a1-m1-cA_2otp-a1-m1-cB
13 7khf-a1-m1-cH 426 97 0.3333 0.0728 0.3196 7.83e-06 7khf-a1-m1-cA_7khf-a1-m1-cH
14 7khf-a1-m1-cH 426 94 0.2473 0.0540 0.2447 3.0 7khf-a1-m1-cA_7khf-a1-m1-cH
15 7khf-a1-m1-cA 426 97 0.3333 0.0728 0.3196 7.83e-06 7khf-a1-m1-cA_7khf-a1-m1-cH
16 7khf-a1-m1-cA 426 94 0.2473 0.0540 0.2447 3.0 7khf-a1-m1-cA_7khf-a1-m1-cH
17 2otp-a1-m1-cB 194 94 0.3118 0.1495 0.3085 8.63e-06 2otp-a1-m1-cA_2otp-a1-m1-cB
18 2otp-a1-m1-cB 194 22 0.1290 0.0619 0.5455 6.1 2otp-a1-m1-cA_2otp-a1-m1-cB
19 7nmu-a1-m1-cBBB 178 94 0.3978 0.2079 0.3936 2.11e-05 7nmu-a1-m1-cAAA_7nmu-a1-m1-cBBB
20 7nmu-a1-m1-cBBB 178 95 0.3656 0.1910 0.3579 4.55e-05 7nmu-a1-m1-cAAA_7nmu-a1-m1-cBBB
21 7nmu-a1-m1-cAAA 174 94 0.3978 0.2126 0.3936 2.18e-05 7nmu-a1-m1-cAAA_7nmu-a1-m1-cBBB
22 7nmu-a1-m1-cAAA 174 95 0.3656 0.1954 0.3579 5.00e-05 7nmu-a1-m1-cAAA_7nmu-a1-m1-cBBB
23 2gi7-a1-m1-cB 167 94 0.3978 0.2216 0.3936 2.77e-05 2gi7-a1-m1-cB_2gi7-a1-m1-cA
24 2gi7-a1-m1-cB 167 82 0.2796 0.1557 0.3171 0.53 2gi7-a1-m1-cB_2gi7-a1-m1-cA
25 2gi7-a1-m1-cA 182 94 0.3978 0.2033 0.3936 3.02e-05 2gi7-a1-m1-cB_2gi7-a1-m1-cA
26 2gi7-a1-m1-cA 182 92 0.3226 0.1648 0.3261 3.21e-05 2gi7-a1-m1-cB_2gi7-a1-m1-cA
27 1vdg-a1-m1-cA 187 95 0.3011 0.1497 0.2947 2.41e-04 1vdg-a1-m1-cA_1vdg-a1-m1-cB
28 1efx-a1-m1-cE 197 96 0.3118 0.1472 0.3021 2.94e-04 1efx-a1-m1-cD_1efx-a1-m1-cE
29 1efx-a1-m1-cE 197 90 0.2903 0.1371 0.3000 0.59 1efx-a1-m1-cD_1efx-a1-m1-cE
30 1efx-a1-m1-cD 197 96 0.3118 0.1472 0.3021 2.94e-04 1efx-a1-m1-cD_1efx-a1-m1-cE
31 1efx-a1-m1-cD 197 90 0.2903 0.1371 0.3000 0.59 1efx-a1-m1-cD_1efx-a1-m1-cE
32 1vdg-a1-m1-cB 187 95 0.3011 0.1497 0.2947 3.19e-04 1vdg-a1-m1-cA_1vdg-a1-m1-cB
33 1b6u-a1-m2-cA 199 96 0.3118 0.1457 0.3021 8.38e-04 1b6u-a1-m1-cA_1b6u-a1-m2-cA
34 1b6u-a1-m2-cA 199 94 0.2903 0.1357 0.2872 0.26 1b6u-a1-m1-cA_1b6u-a1-m2-cA
35 1b6u-a1-m1-cA 199 96 0.3118 0.1457 0.3021 8.38e-04 1b6u-a1-m1-cA_1b6u-a1-m2-cA
36 1b6u-a1-m1-cA 199 94 0.2903 0.1357 0.2872 0.26 1b6u-a1-m1-cA_1b6u-a1-m2-cA
37 2v5y-a1-m2-cA 564 82 0.2473 0.0408 0.2805 0.079 2v5y-a1-m1-cA_2v5y-a1-m2-cA
38 2v5y-a1-m1-cA 564 82 0.2473 0.0408 0.2805 0.079 2v5y-a1-m1-cA_2v5y-a1-m2-cA
39 3wyr-a1-m2-cB 189 92 0.2796 0.1376 0.2826 0.10 3wyr-a1-m1-cA_3wyr-a1-m2-cB, 3wyr-a1-m2-cA_3wyr-a1-m2-cB
40 3wyr-a1-m2-cB 189 108 0.3226 0.1587 0.2778 8.2 3wyr-a1-m1-cA_3wyr-a1-m2-cB, 3wyr-a1-m2-cA_3wyr-a1-m2-cB
41 3wyr-a1-m2-cA 189 92 0.2796 0.1376 0.2826 0.10 3wyr-a1-m2-cA_3wyr-a1-m2-cB
42 3wyr-a1-m2-cA 189 108 0.3226 0.1587 0.2778 8.2 3wyr-a1-m2-cA_3wyr-a1-m2-cB
43 3wyr-a1-m1-cA 189 92 0.2796 0.1376 0.2826 0.10 3wyr-a1-m1-cA_3wyr-a1-m2-cB
44 3wyr-a1-m1-cA 189 108 0.3226 0.1587 0.2778 8.2 3wyr-a1-m1-cA_3wyr-a1-m2-cB
45 5t89-a1-m1-cX 596 76 0.2366 0.0369 0.2895 0.18 5t89-a1-m1-cX_5t89-a1-m1-cY
46 5t89-a1-m1-cY 597 76 0.2366 0.0369 0.2895 0.18 5t89-a1-m1-cX_5t89-a1-m1-cY
47 1c5d-a1-m1-cL 213 84 0.2581 0.1127 0.2857 0.30 1c5d-a1-m1-cA_1c5d-a1-m1-cL
48 1c5d-a1-m1-cA 213 84 0.2581 0.1127 0.2857 0.30 1c5d-a1-m1-cA_1c5d-a1-m1-cL
49 7te1-a1-m1-cL 196 86 0.2688 0.1276 0.2907 0.86 7te1-a1-m1-cL_7te1-a1-m1-cF
50 1f5w-a2-m1-cB 121 40 0.1828 0.1405 0.4250 0.87 1f5w-a2-m1-cB_1f5w-a2-m2-cA
51 7te1-a1-m1-cF 210 86 0.2688 0.1190 0.2907 0.92 7te1-a1-m1-cL_7te1-a1-m1-cF
52 1eaj-a1-m1-cB 120 40 0.1828 0.1417 0.4250 0.94 1eaj-a1-m1-cB_1eaj-a1-m1-cA
53 1f5w-a2-m2-cA 124 40 0.1828 0.1371 0.4250 1.0 1f5w-a2-m1-cB_1f5w-a2-m2-cA
54 1eaj-a1-m1-cA 124 40 0.1828 0.1371 0.4250 1.0 1eaj-a1-m1-cB_1eaj-a1-m1-cA
55 5xwu-a1-m1-cB 343 76 0.2151 0.0583 0.2632 1.1 5xwu-a1-m1-cD_5xwu-a1-m1-cB
56 2xot-a1-m1-cA 331 78 0.2473 0.0695 0.2949 1.6 2xot-a1-m1-cA_2xot-a1-m1-cB
57 2xot-a1-m1-cB 333 78 0.2473 0.0691 0.2949 1.7 2xot-a1-m1-cA_2xot-a1-m1-cB
58 1fcg-a1-m2-cA 171 68 0.1828 0.0994 0.2500 1.9 1fcg-a1-m1-cA_1fcg-a1-m2-cA
59 1fcg-a1-m1-cA 171 68 0.1828 0.0994 0.2500 1.9 1fcg-a1-m1-cA_1fcg-a1-m2-cA
60 1t47-a1-m1-cB 362 62 0.1828 0.0470 0.2742 3.3 1t47-a1-m1-cA_1t47-a1-m1-cB
61 1t47-a1-m1-cA 362 62 0.1828 0.0470 0.2742 3.3 1t47-a1-m1-cA_1t47-a1-m1-cB
62 1h5b-a2-m1-cD 111 45 0.1720 0.1441 0.3556 5.5 1h5b-a2-m1-cD_1h5b-a2-m1-cC
63 6u8c-a1-m1-cL 202 98 0.2581 0.1188 0.2449 7.0 6u8c-a1-m1-cL_6u8c-a1-m1-cC
64 1h5b-a2-m1-cC 113 45 0.1720 0.1416 0.3556 7.4 1h5b-a2-m1-cD_1h5b-a2-m1-cC
65 2yz1-a3-m1-cB 114 24 0.1075 0.0877 0.4167 8.9 2yz1-a3-m1-cA_2yz1-a3-m1-cB
66 2yz1-a3-m1-cA 114 24 0.1075 0.0877 0.4167 8.9 2yz1-a3-m1-cA_2yz1-a3-m1-cB
67 6u6t-a1-m1-cA 268 73 0.2258 0.0784 0.2877 9.2 6u6t-a1-m1-cA_6u6t-a1-m1-cB
68 6u6t-a1-m1-cB 271 73 0.2258 0.0775 0.2877 9.4 6u6t-a1-m1-cA_6u6t-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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