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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=86)
LQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNL
KKGLSTEDATSAYISKAKELIEKYGI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3epy-a2-m1-cA 88 86 1.0000 0.9773 1.0000 6.45e-58 3epy-a2-m1-cB_3epy-a2-m1-cA
2 3epy-a1-m1-cA 88 86 1.0000 0.9773 1.0000 6.45e-58 3epy-a1-m2-cB_3epy-a1-m1-cA
3 3epy-a2-m1-cB 86 86 1.0000 1.0000 1.0000 7.82e-58 3epy-a2-m1-cB_3epy-a2-m1-cA
4 3epy-a1-m2-cB 86 86 1.0000 1.0000 1.0000 7.82e-58 3epy-a1-m1-cB_3epy-a1-m2-cB, 3epy-a1-m2-cB_3epy-a1-m1-cA
5 3epy-a1-m1-cB 86 86 1.0000 1.0000 1.0000 7.82e-58 3epy-a1-m1-cB_3epy-a1-m2-cB
6 7wfs-a1-m1-cB 97 91 0.4070 0.3608 0.3846 2.48e-15 7wfs-a1-m1-cA_7wfs-a1-m1-cB
7 7wfs-a1-m1-cA 97 91 0.4070 0.3608 0.3846 2.48e-15 7wfs-a1-m1-cA_7wfs-a1-m1-cB
8 3edm-a1-m1-cA 226 39 0.1395 0.0531 0.3077 4.1 3edm-a1-m1-cD_3edm-a1-m1-cA
9 6nz4-a1-m1-cA 467 70 0.2442 0.0450 0.3000 9.5 6nz4-a1-m1-cB_6nz4-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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