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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
LQAIAPEVAQSLAEFFAVLADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLR
NLRLVSYRKQGRHVYYQLQDHHIVALYQNALDHLQEC

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1r23-a1-m1-cB 97 97 1.0000 1.0000 1.0000 1.75e-65 1r23-a1-m1-cB_1r23-a1-m1-cA
2 1r23-a1-m1-cA 104 97 1.0000 0.9327 1.0000 1.81e-65 1r23-a1-m1-cB_1r23-a1-m1-cA
3 6cdb-a3-m4-cB 95 90 0.3402 0.3474 0.3667 2.59e-17 6cdb-a3-m2-cB_6cdb-a3-m4-cB, 6cdb-a3-m4-cB_6cdb-a3-m3-cA
4 6cdb-a3-m2-cB 95 90 0.3402 0.3474 0.3667 2.59e-17 6cdb-a3-m2-cB_6cdb-a3-m4-cB
5 6cdb-a3-m3-cA 97 90 0.3402 0.3402 0.3667 2.69e-17 6cdb-a3-m4-cB_6cdb-a3-m3-cA
6 2lkp-a1-m1-cB 119 87 0.4124 0.3361 0.4598 3.13e-17 2lkp-a1-m1-cA_2lkp-a1-m1-cB
7 2lkp-a1-m1-cA 119 87 0.4124 0.3361 0.4598 3.13e-17 2lkp-a1-m1-cA_2lkp-a1-m1-cB
8 2kjb-a1-m1-cB 95 88 0.3196 0.3263 0.3523 2.69e-16 2kjb-a1-m1-cA_2kjb-a1-m1-cB
9 2kjb-a1-m1-cA 95 88 0.3196 0.3263 0.3523 2.69e-16 2kjb-a1-m1-cA_2kjb-a1-m1-cB
10 1r1v-a3-m2-cA 95 88 0.3196 0.3263 0.3523 2.69e-16 1r1v-a3-m2-cA_1r1v-a3-m2-cB
11 1r1v-a3-m2-cB 96 88 0.3196 0.3229 0.3523 2.70e-16 1r1v-a3-m2-cA_1r1v-a3-m2-cB
12 4omz-a2-m1-cC 100 89 0.3196 0.3100 0.3483 7.56e-13 4omz-a2-m1-cD_4omz-a2-m1-cC
13 4omz-a2-m1-cD 98 89 0.3196 0.3163 0.3483 7.78e-13 4omz-a2-m1-cD_4omz-a2-m1-cC
14 6uvu-a1-m1-cA 111 83 0.3402 0.2973 0.3976 6.52e-12 6uvu-a1-m1-cA_6uvu-a1-m1-cB
15 6uvu-a1-m1-cB 114 83 0.3402 0.2895 0.3976 7.19e-12 6uvu-a1-m1-cA_6uvu-a1-m1-cB
16 3f6v-a1-m2-cA 96 69 0.2990 0.3021 0.4203 7.88e-09 3f6v-a1-m1-cA_3f6v-a1-m2-cA
17 3f6v-a1-m1-cA 96 69 0.2990 0.3021 0.4203 7.88e-09 3f6v-a1-m1-cA_3f6v-a1-m2-cA
18 4ooi-a1-m1-cA 95 88 0.2887 0.2947 0.3182 3.33e-08 4ooi-a1-m1-cA_4ooi-a1-m1-cB
19 4ooi-a1-m1-cB 96 88 0.2887 0.2917 0.3182 3.40e-08 4ooi-a1-m1-cA_4ooi-a1-m1-cB
20 6jmi-a1-m1-cA 100 75 0.2887 0.2800 0.3733 4.20e-08 6jmi-a1-m1-cD_6jmi-a1-m1-cA
21 2jsc-a1-m1-cB 97 73 0.2990 0.2990 0.3973 4.26e-08 2jsc-a1-m1-cA_2jsc-a1-m1-cB
22 2jsc-a1-m1-cA 96 72 0.2990 0.3021 0.4028 5.95e-08 2jsc-a1-m1-cA_2jsc-a1-m1-cB
23 3pqk-a3-m1-cE 100 83 0.2887 0.2800 0.3373 2.57e-07 3pqk-a3-m1-cF_3pqk-a3-m1-cE
24 3pqk-a3-m1-cF 99 83 0.2887 0.2828 0.3373 2.60e-07 3pqk-a3-m1-cF_3pqk-a3-m1-cE
25 6o8l-a1-m2-cA 92 86 0.2680 0.2826 0.3023 1.03e-06 6o8l-a1-m1-cA_6o8l-a1-m2-cA
26 6o8l-a1-m1-cA 92 86 0.2680 0.2826 0.3023 1.03e-06 6o8l-a1-m1-cA_6o8l-a1-m2-cA
27 3f72-a2-m1-cC 103 60 0.2165 0.2039 0.3500 2.84e-06 3f72-a2-m1-cD_3f72-a2-m1-cC
28 3jth-a1-m1-cB 88 67 0.2680 0.2955 0.3881 2.88e-06 3jth-a1-m1-cB_3jth-a1-m1-cA
29 6j0e-a1-m1-cA 124 70 0.2371 0.1855 0.3286 2.94e-06 6j0e-a1-m1-cA_6j0e-a1-m1-cB
30 3jth-a1-m1-cA 92 67 0.2680 0.2826 0.3881 3.08e-06 3jth-a1-m1-cB_3jth-a1-m1-cA
31 6j0e-a1-m1-cB 125 70 0.2371 0.1840 0.3286 3.12e-06 6j0e-a1-m1-cA_6j0e-a1-m1-cB
32 3f72-a2-m1-cD 100 59 0.2062 0.2000 0.3390 1.64e-05 3f72-a2-m1-cD_3f72-a2-m1-cC
33 7p6f-a3-m3-cDDD 97 75 0.2268 0.2268 0.2933 2.03e-05 7p6f-a3-m1-cDDD_7p6f-a3-m3-cDDD
34 7p6f-a3-m1-cDDD 97 75 0.2268 0.2268 0.2933 2.03e-05 7p6f-a3-m1-cDDD_7p6f-a3-m3-cDDD
35 6j05-a1-m1-cB 90 62 0.2165 0.2333 0.3387 7.91e-05 6j05-a1-m1-cB_6j05-a1-m1-cA
36 6j05-a1-m1-cA 101 74 0.2577 0.2475 0.3378 1.46e-04 6j05-a1-m1-cB_6j05-a1-m1-cA
37 3cuo-a2-m1-cD 94 85 0.2268 0.2340 0.2588 5.83e-04 3cuo-a2-m1-cD_3cuo-a2-m1-cC
38 3cuo-a2-m1-cC 95 79 0.2062 0.2105 0.2532 6.45e-04 3cuo-a2-m1-cD_3cuo-a2-m1-cC
39 6jmi-a1-m1-cD 83 55 0.2371 0.2771 0.4182 8.53e-04 6jmi-a1-m1-cD_6jmi-a1-m1-cA
40 7txn-a1-m1-cB 105 83 0.2680 0.2476 0.3133 8.54e-04 7txn-a1-m1-cA_7txn-a1-m1-cB
41 7txn-a1-m1-cA 104 83 0.2680 0.2500 0.3133 0.001 7txn-a1-m1-cA_7txn-a1-m1-cB
42 2p4w-a1-m1-cB 198 78 0.2371 0.1162 0.2949 0.016 2p4w-a1-m1-cA_2p4w-a1-m1-cB
43 2p4w-a1-m1-cA 197 78 0.2371 0.1168 0.2949 0.017 2p4w-a1-m1-cA_2p4w-a1-m1-cB
44 3f6o-a2-m2-cA 97 63 0.1856 0.1856 0.2857 0.024 3f6o-a2-m1-cA_3f6o-a2-m2-cA
45 3f6o-a2-m1-cA 97 63 0.1856 0.1856 0.2857 0.024 3f6o-a2-m1-cA_3f6o-a2-m2-cA
46 3f6o-a1-m1-cA 97 63 0.1856 0.1856 0.2857 0.024 3f6o-a1-m1-cB_3f6o-a1-m1-cA
47 3f6o-a1-m1-cB 91 63 0.1856 0.1978 0.2857 0.029 3f6o-a1-m1-cB_3f6o-a1-m1-cA
48 1s7o-a2-m1-cB 105 66 0.1546 0.1429 0.2273 0.68 1s7o-a2-m1-cB_1s7o-a2-m1-cC
49 4z2y-a1-m2-cA 299 48 0.1856 0.0602 0.3750 0.75 4z2y-a1-m1-cA_4z2y-a1-m2-cA
50 4z2y-a1-m1-cA 299 48 0.1856 0.0602 0.3750 0.75 4z2y-a1-m1-cA_4z2y-a1-m2-cA
51 1s7o-a2-m1-cC 108 66 0.1546 0.1389 0.2273 0.86 1s7o-a2-m1-cB_1s7o-a2-m1-cC
52 1s7o-a1-m1-cC 108 66 0.1546 0.1389 0.2273 0.86 1s7o-a1-m1-cA_1s7o-a1-m1-cC
53 1s7o-a1-m1-cA 106 66 0.1546 0.1415 0.2273 0.89 1s7o-a1-m1-cA_1s7o-a1-m1-cC
54 3pef-a2-m1-cH 285 49 0.1753 0.0596 0.3469 4.7 3pef-a2-m1-cE_3pef-a2-m1-cH, 3pef-a2-m1-cF_3pef-a2-m1-cH
55 3pef-a2-m1-cF 284 49 0.1753 0.0599 0.3469 5.0 3pef-a2-m1-cF_3pef-a2-m1-cH
56 3pef-a2-m1-cE 285 49 0.1753 0.0596 0.3469 5.0 3pef-a2-m1-cE_3pef-a2-m1-cH
57 1f9w-a1-m1-cB 300 54 0.1753 0.0567 0.3148 5.8 1f9w-a1-m1-cA_1f9w-a1-m1-cB
58 1f9w-a1-m1-cA 300 54 0.1753 0.0567 0.3148 5.8 1f9w-a1-m1-cA_1f9w-a1-m1-cB
59 5tjj-a1-m1-cA 251 50 0.1649 0.0637 0.3200 6.8 5tjj-a1-m1-cB_5tjj-a1-m1-cA
60 5tjj-a1-m1-cB 248 50 0.1649 0.0645 0.3200 7.8 5tjj-a1-m1-cB_5tjj-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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