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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=95)
LQEMEKNSAKAVVLLKAMANERRLQILCMLLDNELSVGELSSRLELSQSALSQHLAWLRR
DGLVNTRKEAQTVFYTLSSTEVKAMIELLHRLYCQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4ooi-a1-m1-cB 96 95 1.0000 0.9896 1.0000 2.22e-64 4ooi-a1-m1-cA_4ooi-a1-m1-cB
2 4ooi-a1-m1-cA 95 95 1.0000 1.0000 1.0000 2.25e-64 4ooi-a1-m1-cA_4ooi-a1-m1-cB
3 3jth-a1-m1-cA 92 90 0.7684 0.7935 0.8111 5.30e-42 3jth-a1-m1-cB_3jth-a1-m1-cA
4 3jth-a1-m1-cB 88 90 0.7684 0.8295 0.8111 5.43e-42 3jth-a1-m1-cB_3jth-a1-m1-cA
5 4omz-a2-m1-cD 98 83 0.4211 0.4082 0.4819 2.92e-20 4omz-a2-m1-cD_4omz-a2-m1-cC
6 4omz-a2-m1-cC 100 83 0.4211 0.4000 0.4819 3.01e-20 4omz-a2-m1-cD_4omz-a2-m1-cC
7 6o8l-a1-m2-cA 92 81 0.3789 0.3913 0.4444 3.13e-19 6o8l-a1-m1-cA_6o8l-a1-m2-cA
8 6o8l-a1-m1-cA 92 81 0.3789 0.3913 0.4444 3.13e-19 6o8l-a1-m1-cA_6o8l-a1-m2-cA
9 3cuo-a2-m1-cC 95 94 0.4000 0.4000 0.4043 3.10e-18 3cuo-a2-m1-cD_3cuo-a2-m1-cC
10 3cuo-a2-m1-cD 94 90 0.3895 0.3936 0.4111 4.82e-17 3cuo-a2-m1-cD_3cuo-a2-m1-cC
11 3pqk-a3-m1-cE 100 93 0.3368 0.3200 0.3441 6.97e-17 3pqk-a3-m1-cF_3pqk-a3-m1-cE
12 3pqk-a3-m1-cF 99 93 0.3368 0.3232 0.3441 7.58e-17 3pqk-a3-m1-cF_3pqk-a3-m1-cE
13 7p6f-a3-m3-cDDD 97 64 0.2526 0.2474 0.3750 1.56e-10 7p6f-a3-m1-cDDD_7p6f-a3-m3-cDDD
14 7p6f-a3-m1-cDDD 97 64 0.2526 0.2474 0.3750 1.56e-10 7p6f-a3-m1-cDDD_7p6f-a3-m3-cDDD
15 6jmi-a1-m1-cA 100 83 0.2737 0.2600 0.3133 5.63e-10 6jmi-a1-m1-cD_6jmi-a1-m1-cA
16 2kjb-a1-m1-cB 95 74 0.2632 0.2632 0.3378 3.71e-09 2kjb-a1-m1-cA_2kjb-a1-m1-cB
17 2kjb-a1-m1-cA 95 74 0.2632 0.2632 0.3378 3.71e-09 2kjb-a1-m1-cA_2kjb-a1-m1-cB
18 1r1v-a3-m2-cA 95 74 0.2632 0.2632 0.3378 3.71e-09 1r1v-a3-m2-cA_1r1v-a3-m2-cB
19 1r1v-a3-m2-cB 96 74 0.2632 0.2604 0.3378 4.14e-09 1r1v-a3-m2-cA_1r1v-a3-m2-cB
20 6cdb-a3-m4-cB 95 74 0.2632 0.2632 0.3378 5.53e-09 6cdb-a3-m2-cB_6cdb-a3-m4-cB, 6cdb-a3-m4-cB_6cdb-a3-m3-cA
21 6cdb-a3-m2-cB 95 74 0.2632 0.2632 0.3378 5.53e-09 6cdb-a3-m2-cB_6cdb-a3-m4-cB
22 6cdb-a3-m3-cA 97 74 0.2632 0.2577 0.3378 6.09e-09 6cdb-a3-m4-cB_6cdb-a3-m3-cA
23 2jsc-a1-m1-cB 97 77 0.3053 0.2990 0.3766 1.97e-08 2jsc-a1-m1-cA_2jsc-a1-m1-cB
24 2jsc-a1-m1-cA 96 77 0.3053 0.3021 0.3766 2.06e-08 2jsc-a1-m1-cA_2jsc-a1-m1-cB
25 2lkp-a1-m1-cB 119 80 0.2737 0.2185 0.3250 2.19e-07 2lkp-a1-m1-cA_2lkp-a1-m1-cB
26 2lkp-a1-m1-cA 119 80 0.2737 0.2185 0.3250 2.19e-07 2lkp-a1-m1-cA_2lkp-a1-m1-cB
27 3f72-a2-m1-cC 103 81 0.3053 0.2816 0.3580 1.29e-05 3f72-a2-m1-cD_3f72-a2-m1-cC
28 6j05-a1-m1-cB 90 87 0.2632 0.2778 0.2874 1.68e-05 6j05-a1-m1-cB_6j05-a1-m1-cA
29 6j05-a1-m1-cA 101 87 0.2632 0.2475 0.2874 2.49e-05 6j05-a1-m1-cB_6j05-a1-m1-cA
30 3f6v-a1-m2-cA 96 65 0.2316 0.2292 0.3385 2.67e-05 3f6v-a1-m1-cA_3f6v-a1-m2-cA
31 3f6v-a1-m1-cA 96 65 0.2316 0.2292 0.3385 2.67e-05 3f6v-a1-m1-cA_3f6v-a1-m2-cA
32 3gw2-a1-m2-cA 92 75 0.2632 0.2717 0.3333 4.10e-05 3gw2-a1-m1-cA_3gw2-a1-m2-cA
33 3gw2-a1-m1-cA 92 75 0.2632 0.2717 0.3333 4.10e-05 3gw2-a1-m1-cA_3gw2-a1-m2-cA
34 1r23-a1-m1-cB 97 54 0.2105 0.2062 0.3704 9.72e-05 1r23-a1-m1-cB_1r23-a1-m1-cA
35 1r23-a1-m1-cA 104 54 0.2105 0.1923 0.3704 1.31e-04 1r23-a1-m1-cB_1r23-a1-m1-cA
36 3f72-a2-m1-cD 100 81 0.2842 0.2700 0.3333 1.83e-04 3f72-a2-m1-cD_3f72-a2-m1-cC
37 2p4w-a1-m1-cA 197 56 0.2316 0.1117 0.3929 5.77e-04 2p4w-a1-m1-cA_2p4w-a1-m1-cB
38 2p4w-a1-m1-cB 198 56 0.2316 0.1111 0.3929 6.08e-04 2p4w-a1-m1-cA_2p4w-a1-m1-cB
39 2oqg-a1-m1-cB 107 82 0.2421 0.2150 0.2805 7.43e-04 2oqg-a1-m1-cA_2oqg-a1-m1-cB, 2oqg-a1-m1-cD_2oqg-a1-m1-cB
40 2oqg-a1-m1-cA 107 82 0.2421 0.2150 0.2805 7.43e-04 2oqg-a1-m1-cA_2oqg-a1-m1-cB, 2oqg-a1-m1-cD_2oqg-a1-m1-cA
41 2oqg-a1-m1-cD 105 82 0.2421 0.2190 0.2805 7.77e-04 2oqg-a1-m1-cC_2oqg-a1-m1-cD, 2oqg-a1-m1-cD_2oqg-a1-m1-cA, 2oqg-a1-m1-cD_2oqg-a1-m1-cB
42 2oqg-a1-m1-cC 105 82 0.2421 0.2190 0.2805 7.77e-04 2oqg-a1-m1-cC_2oqg-a1-m1-cD
43 6jmi-a1-m1-cD 83 51 0.2211 0.2530 0.4118 0.002 6jmi-a1-m1-cD_6jmi-a1-m1-cA
44 6j0e-a1-m1-cA 124 65 0.2105 0.1613 0.3077 0.006 6j0e-a1-m1-cA_6j0e-a1-m1-cB
45 6j0e-a1-m1-cB 125 65 0.2105 0.1600 0.3077 0.006 6j0e-a1-m1-cA_6j0e-a1-m1-cB
46 7txn-a1-m1-cB 105 58 0.2000 0.1810 0.3276 0.24 7txn-a1-m1-cA_7txn-a1-m1-cB
47 4fx0-a1-m1-cB 135 31 0.1263 0.0889 0.3871 0.26 4fx0-a1-m1-cA_4fx0-a1-m1-cB
48 7txn-a1-m1-cA 104 58 0.2000 0.1827 0.3276 0.26 7txn-a1-m1-cA_7txn-a1-m1-cB
49 6uvu-a1-m1-cA 111 82 0.2316 0.1982 0.2683 0.39 6uvu-a1-m1-cA_6uvu-a1-m1-cB
50 6uvu-a1-m1-cB 114 82 0.2316 0.1930 0.2683 0.43 6uvu-a1-m1-cA_6uvu-a1-m1-cB
51 4fx0-a1-m1-cA 122 30 0.1263 0.0984 0.4000 0.48 4fx0-a1-m1-cA_4fx0-a1-m1-cB
52 4pzj-a1-m2-cA 67 18 0.1053 0.1493 0.5556 2.2 4pzj-a1-m1-cA_4pzj-a1-m2-cA
53 4pzj-a1-m1-cA 67 18 0.1053 0.1493 0.5556 2.2 4pzj-a1-m1-cA_4pzj-a1-m2-cA
54 1g3s-a1-m2-cA 212 25 0.1263 0.0566 0.4800 2.6 1g3s-a1-m1-cA_1g3s-a1-m2-cA
55 1g3s-a1-m1-cA 212 25 0.1263 0.0566 0.4800 2.6 1g3s-a1-m1-cA_1g3s-a1-m2-cA
56 1c0w-a1-m1-cD 175 25 0.1263 0.0686 0.4800 2.9 1c0w-a1-m1-cC_1c0w-a1-m1-cD
57 1c0w-a1-m1-cC 175 25 0.1263 0.0686 0.4800 2.9 1c0w-a1-m1-cC_1c0w-a1-m1-cD
58 4cic-a1-m1-cB 137 43 0.1474 0.1022 0.3256 2.9 4cic-a1-m1-cB_4cic-a1-m1-cA
59 4cic-a1-m1-cA 138 43 0.1474 0.1014 0.3256 3.0 4cic-a1-m1-cB_4cic-a1-m1-cA
60 1ddn-a1-m1-cD 118 25 0.1263 0.1017 0.4800 3.2 1ddn-a1-m1-cC_1ddn-a1-m1-cD
61 1ddn-a1-m1-cC 118 25 0.1263 0.1017 0.4800 3.2 1ddn-a1-m1-cC_1ddn-a1-m1-cD
62 3l09-a3-m1-cC 250 36 0.1158 0.0440 0.3056 5.0 3l09-a3-m1-cD_3l09-a3-m1-cC
63 3l09-a2-m1-cB 248 36 0.1158 0.0444 0.3056 5.1 3l09-a2-m1-cB_3l09-a2-m1-cD
64 3l09-a3-m1-cD 248 36 0.1158 0.0444 0.3056 5.5 3l09-a3-m1-cD_3l09-a3-m1-cC
65 3l09-a2-m1-cD 248 36 0.1158 0.0444 0.3056 5.5 3l09-a2-m1-cB_3l09-a2-m1-cD
66 3dh1-a2-m1-cC 160 85 0.2211 0.1313 0.2471 7.1 3dh1-a2-m1-cB_3dh1-a2-m1-cC
67 3dh1-a2-m1-cB 160 85 0.2211 0.1313 0.2471 7.1 3dh1-a2-m1-cB_3dh1-a2-m1-cC
68 1vlu-a2-m2-cB 391 31 0.1368 0.0332 0.4194 9.2 1vlu-a2-m1-cB_1vlu-a2-m2-cB
69 1vlu-a2-m1-cB 391 31 0.1368 0.0332 0.4194 9.2 1vlu-a2-m1-cB_1vlu-a2-m2-cB

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Reference:
Jacob Schwartz et al.

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