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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=60)
LQVLQVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLNHILE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1vf6-a4-m1-cB 60 60 1.0000 1.0000 1.0000 1.34e-36 1vf6-a4-m1-cA_1vf6-a4-m1-cB
2 1vf6-a3-m2-cB 60 60 1.0000 1.0000 1.0000 1.34e-36 1vf6-a3-m1-cA_1vf6-a3-m2-cB, 1vf6-a3-m1-cB_1vf6-a3-m2-cB
3 1vf6-a3-m1-cB 60 60 1.0000 1.0000 1.0000 1.34e-36 1vf6-a3-m1-cB_1vf6-a3-m2-cB, 1vf6-a3-m2-cA_1vf6-a3-m1-cB
4 1vf6-a4-m1-cA 58 58 0.9667 1.0000 1.0000 1.66e-35 1vf6-a4-m1-cA_1vf6-a4-m1-cB
5 1vf6-a3-m2-cA 58 58 0.9667 1.0000 1.0000 1.66e-35 1vf6-a3-m1-cA_1vf6-a3-m2-cA, 1vf6-a3-m2-cA_1vf6-a3-m1-cB
6 1vf6-a3-m1-cA 58 58 0.9667 1.0000 1.0000 1.66e-35 1vf6-a3-m1-cA_1vf6-a3-m2-cA, 1vf6-a3-m1-cA_1vf6-a3-m2-cB
7 1y76-a1-m1-cC 62 56 0.8333 0.8065 0.8929 1.04e-29 1y76-a1-m1-cA_1y76-a1-m1-cC
8 1y76-a1-m1-cA 62 56 0.8333 0.8065 0.8929 1.04e-29 1y76-a1-m1-cA_1y76-a1-m1-cC
9 2jeo-a1-m4-cA 212 19 0.1667 0.0472 0.5263 8.2 2jeo-a1-m2-cA_2jeo-a1-m4-cA, 2jeo-a1-m3-cA_2jeo-a1-m4-cA
10 2jeo-a1-m3-cA 212 19 0.1667 0.0472 0.5263 8.2 2jeo-a1-m3-cA_2jeo-a1-m4-cA
11 2jeo-a1-m2-cA 212 19 0.1667 0.0472 0.5263 8.2 2jeo-a1-m2-cA_2jeo-a1-m4-cA
12 1lw7-a1-m4-cA 338 37 0.2167 0.0385 0.3514 9.3 1lw7-a1-m1-cA_1lw7-a1-m4-cA, 1lw7-a1-m2-cA_1lw7-a1-m4-cA, 1lw7-a1-m3-cA_1lw7-a1-m4-cA
13 1lw7-a1-m3-cA 338 37 0.2167 0.0385 0.3514 9.3 1lw7-a1-m3-cA_1lw7-a1-m4-cA
14 1lw7-a1-m2-cA 338 37 0.2167 0.0385 0.3514 9.3 1lw7-a1-m2-cA_1lw7-a1-m4-cA
15 1lw7-a1-m1-cA 338 37 0.2167 0.0385 0.3514 9.3 1lw7-a1-m1-cA_1lw7-a1-m4-cA

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Reference:
Jacob Schwartz et al.

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