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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=54)
LRVTDVTSTSVTLSWRVEYREARYTVTGLKPGTEYEFRVRAVVSVTTGHHHHHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5j7k-a2-m1-cD 54 54 1.0000 1.0000 1.0000 7.03e-33 5j7k-a2-m1-cD_5j7k-a2-m1-cG
2 5j7k-a1-m1-cC 78 76 0.9815 0.6795 0.6974 4.25e-23 5j7k-a1-m1-cC_5j7k-a1-m1-cA
3 5j7k-a1-m1-cA 84 82 0.9815 0.6310 0.6463 2.92e-22 5j7k-a1-m1-cC_5j7k-a1-m1-cA
4 5j7k-a2-m1-cG 85 84 0.9815 0.6235 0.6310 7.20e-22 5j7k-a2-m1-cD_5j7k-a2-m1-cG
5 5j7k-a2-m1-cF 79 78 0.9630 0.6582 0.6667 7.64e-22 5j7k-a2-m1-cF_5j7k-a2-m1-cB
6 5j7k-a2-m1-cB 90 80 0.8889 0.5333 0.6000 2.65e-17 5j7k-a2-m1-cF_5j7k-a2-m1-cB
7 4yfg-a1-m1-cB 481 72 0.4444 0.0499 0.3333 3.22e-04 4yfg-a1-m1-cA_4yfg-a1-m1-cB
8 4yfg-a1-m1-cA 481 72 0.4444 0.0499 0.3333 3.22e-04 4yfg-a1-m1-cA_4yfg-a1-m1-cB
9 4lpu-a1-m1-cB 93 68 0.3889 0.2258 0.3088 0.022 4lpu-a1-m1-cA_4lpu-a1-m1-cB
10 4lpu-a1-m1-cA 93 68 0.3889 0.2258 0.3088 0.022 4lpu-a1-m1-cA_4lpu-a1-m1-cB
11 5x83-a1-m1-cD 195 16 0.2222 0.0615 0.7500 0.091 5x83-a1-m1-cD_5x83-a1-m1-cB
12 5x83-a1-m1-cB 202 16 0.2222 0.0594 0.7500 0.096 5x83-a1-m1-cD_5x83-a1-m1-cB
13 3fcd-a1-m1-cB 116 60 0.3333 0.1552 0.3000 0.10 3fcd-a1-m1-cA_3fcd-a1-m1-cB
14 3t1w-a1-m2-cA 368 21 0.1852 0.0272 0.4762 0.29 3t1w-a1-m1-cA_3t1w-a1-m2-cA
15 3t1w-a1-m1-cA 368 21 0.1852 0.0272 0.4762 0.29 3t1w-a1-m1-cA_3t1w-a1-m2-cA
16 2ck2-a1-m1-cB 96 15 0.1667 0.0938 0.6000 0.48 2ck2-a1-m1-cA_2ck2-a1-m1-cB
17 2ck2-a1-m1-cA 94 15 0.1667 0.0957 0.6000 0.53 2ck2-a1-m1-cA_2ck2-a1-m1-cB
18 3b83-a1-m8-cG 99 42 0.3148 0.1717 0.4048 0.62 3b83-a1-m2-cA_3b83-a1-m8-cG, 3b83-a1-m2-cE_3b83-a1-m8-cG
19 3b83-a1-m4-cE 99 42 0.3148 0.1717 0.4048 0.62 3b83-a1-m1-cC_3b83-a1-m4-cE, 3b83-a1-m4-cC_3b83-a1-m4-cE, 3b83-a1-m4-cF_3b83-a1-m4-cE
20 3b83-a1-m4-cC 99 42 0.3148 0.1717 0.4048 0.62 3b83-a1-m4-cC_3b83-a1-m4-cE
21 3b83-a1-m2-cE 99 42 0.3148 0.1717 0.4048 0.62 3b83-a1-m2-cE_3b83-a1-m8-cG
22 3b83-a1-m1-cC 99 42 0.3148 0.1717 0.4048 0.62 3b83-a1-m1-cC_3b83-a1-m4-cE
23 1bqu-a1-m1-cB 215 21 0.2037 0.0512 0.5238 0.83 1bqu-a1-m1-cA_1bqu-a1-m1-cB
24 1bqu-a1-m1-cA 208 21 0.2037 0.0529 0.5238 0.84 1bqu-a1-m1-cA_1bqu-a1-m1-cB
25 2a1f-a3-m1-cD 236 31 0.2222 0.0508 0.3871 0.96 2a1f-a3-m1-cD_2a1f-a3-m1-cC
26 3acd-a1-m2-cA 164 42 0.2963 0.0976 0.3810 1.5 3acd-a1-m1-cA_3acd-a1-m2-cA
27 3acd-a1-m1-cA 164 42 0.2963 0.0976 0.3810 1.5 3acd-a1-m1-cA_3acd-a1-m2-cA
28 4bkf-a1-m1-cB 505 36 0.2778 0.0297 0.4167 1.5 4bkf-a1-m1-cA_4bkf-a1-m1-cB
29 4bkf-a1-m1-cA 505 36 0.2778 0.0297 0.4167 1.5 4bkf-a1-m1-cA_4bkf-a1-m1-cB
30 2rbl-a1-m1-cB 89 19 0.1667 0.1011 0.4737 2.2 2rbl-a1-m1-cA_2rbl-a1-m1-cB
31 2rbl-a1-m1-cA 89 19 0.1667 0.1011 0.4737 2.2 2rbl-a1-m1-cA_2rbl-a1-m1-cB
32 4nh4-a1-m1-cB 351 12 0.1667 0.0256 0.7500 3.2 4nh4-a1-m1-cB_4nh4-a1-m1-cA
33 7odu-a3-m1-cA 129 53 0.2963 0.1240 0.3019 3.8 7odu-a3-m1-cB_7odu-a3-m1-cA
34 6bqo-a2-m2-cC 95 17 0.1667 0.0947 0.5294 4.3 6bqo-a2-m1-cC_6bqo-a2-m2-cC
35 6bqo-a2-m1-cC 95 17 0.1667 0.0947 0.5294 4.3 6bqo-a2-m1-cC_6bqo-a2-m2-cC
36 5e7t-a1-m3-cA 129 16 0.1852 0.0775 0.6250 5.1 5e7t-a1-m2-cA_5e7t-a1-m3-cA
37 5e7t-a1-m2-cA 129 16 0.1852 0.0775 0.6250 5.1 5e7t-a1-m2-cA_5e7t-a1-m3-cA
38 7mrm-a1-m1-cA 365 25 0.2222 0.0329 0.4800 5.5 7mrm-a1-m1-cB_7mrm-a1-m1-cA
39 7mrm-a1-m1-cB 360 25 0.2222 0.0333 0.4800 5.6 7mrm-a1-m1-cB_7mrm-a1-m1-cA
40 7tym-a1-m1-cB 771 29 0.2407 0.0169 0.4483 6.2 7tym-a1-m1-cA_7tym-a1-m1-cB
41 7tym-a1-m1-cA 771 29 0.2407 0.0169 0.4483 6.2 7tym-a1-m1-cA_7tym-a1-m1-cB
42 3igh-a1-m2-cX 483 40 0.2593 0.0290 0.3500 6.6 3igh-a1-m1-cX_3igh-a1-m2-cX
43 3igh-a1-m1-cX 483 40 0.2593 0.0290 0.3500 6.6 3igh-a1-m1-cX_3igh-a1-m2-cX
44 2v5y-a1-m2-cA 564 22 0.1852 0.0177 0.4545 7.8 2v5y-a1-m1-cA_2v5y-a1-m2-cA
45 2v5y-a1-m1-cA 564 22 0.1852 0.0177 0.4545 7.8 2v5y-a1-m1-cA_2v5y-a1-m2-cA
46 7n3j-a1-m1-cB 167 13 0.1481 0.0479 0.6154 9.7 7n3j-a1-m1-cA_7n3j-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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