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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
LSNEDPKDTLLREFQEEIARLKAQLEKKGMLVEDLEKERDFYFGKLRNIELICQENEGEN
DPVLQRIVDILYATDEGFV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5jvm-a1-m1-cB 79 79 1.0000 1.0000 1.0000 3.33e-52 5jvm-a1-m1-cB_5jvm-a1-m1-cA
2 5jvm-a1-m1-cA 82 79 1.0000 0.9634 1.0000 4.48e-52 5jvm-a1-m1-cB_5jvm-a1-m1-cA
3 5jvu-a1-m1-cA 76 65 0.6709 0.6974 0.8154 4.27e-30 5jvu-a1-m1-cB_5jvu-a1-m1-cA
4 5jvp-a2-m3-cB 88 86 0.7468 0.6705 0.6860 4.96e-30 5jvp-a2-m1-cB_5jvp-a2-m3-cB
5 5jvp-a2-m1-cB 88 86 0.7468 0.6705 0.6860 4.96e-30 5jvp-a2-m1-cB_5jvp-a2-m3-cB
6 6pf2-a1-m1-cA 157 48 0.6076 0.3057 1.0000 2.35e-29 6pf2-a1-m1-cB_6pf2-a1-m1-cA
7 5jv3-a2-m1-cD 68 75 0.6709 0.7794 0.7067 7.35e-28 5jv3-a2-m1-cC_5jv3-a2-m1-cD
8 6pfp-a2-m1-cD 156 59 0.6076 0.3077 0.8136 4.40e-27 6pfp-a2-m1-cC_6pfp-a2-m1-cD
9 6pfp-a2-m1-cC 156 59 0.6076 0.3077 0.8136 4.40e-27 6pfp-a2-m1-cC_6pfp-a2-m1-cD
10 6pf2-a1-m1-cB 150 45 0.5696 0.3000 1.0000 9.08e-27 6pf2-a1-m1-cB_6pf2-a1-m1-cA
11 5jvu-a1-m1-cB 69 60 0.6076 0.6957 0.8000 2.29e-26 5jvu-a1-m1-cB_5jvu-a1-m1-cA
12 3mtu-a2-m1-cA 72 67 0.5823 0.6389 0.6866 4.68e-26 3mtu-a2-m1-cB_3mtu-a2-m1-cA
13 5jv3-a2-m1-cC 64 66 0.6076 0.7500 0.7273 1.28e-25 5jv3-a2-m1-cC_5jv3-a2-m1-cD
14 4xa1-a1-m1-cB 155 65 0.5696 0.2903 0.6923 2.17e-25 4xa1-a1-m1-cA_4xa1-a1-m1-cB
15 4xa1-a1-m1-cA 153 63 0.5443 0.2810 0.6825 5.04e-24 4xa1-a1-m1-cA_4xa1-a1-m1-cB
16 3mtu-a2-m1-cD 64 61 0.5443 0.6719 0.7049 1.21e-23 3mtu-a2-m1-cD_3mtu-a2-m1-cB
17 3mtu-a2-m1-cB 65 60 0.5316 0.6462 0.7000 5.42e-23 3mtu-a2-m1-cB_3mtu-a2-m1-cA, 3mtu-a2-m1-cD_3mtu-a2-m1-cB
18 6yf5-a2-m1-cD 82 36 0.4557 0.4390 1.0000 4.28e-21 6yf5-a2-m1-cD_6yf5-a2-m1-cC
19 6yf5-a2-m1-cC 87 61 0.5316 0.4828 0.6885 4.94e-21 6yf5-a2-m1-cD_6yf5-a2-m1-cC
20 5jx1-a1-m2-cA 64 75 0.6709 0.8281 0.7067 4.01e-20 5jx1-a1-m1-cA_5jx1-a1-m2-cA
21 5jx1-a1-m1-cA 64 75 0.6709 0.8281 0.7067 4.01e-20 5jx1-a1-m1-cA_5jx1-a1-m2-cA
22 4xa6-a2-m1-cC 100 43 0.5063 0.4000 0.9302 5.45e-20 4xa6-a2-m1-cD_4xa6-a2-m1-cC
23 4xa6-a2-m1-cD 93 42 0.4937 0.4194 0.9286 4.70e-19 4xa6-a2-m1-cD_4xa6-a2-m1-cC
24 4xa6-a1-m1-cA 149 42 0.4937 0.2617 0.9286 9.81e-19 4xa6-a1-m1-cB_4xa6-a1-m1-cA
25 4xa6-a1-m1-cB 146 41 0.4684 0.2534 0.9024 1.18e-15 4xa6-a1-m1-cB_4xa6-a1-m1-cA
26 4xa3-a1-m1-cA 142 62 0.4430 0.2465 0.5645 1.30e-14 4xa3-a1-m1-cA_4xa3-a1-m1-cB
27 4xa3-a1-m1-cB 142 61 0.4304 0.2394 0.5574 1.72e-13 4xa3-a1-m1-cA_4xa3-a1-m1-cB
28 4e61-a1-m1-cA 91 77 0.4177 0.3626 0.4286 1.36e-09 4e61-a1-m1-cB_4e61-a1-m1-cA
29 5m9e-a2-m1-cD 70 68 0.3291 0.3714 0.3824 2.44e-08 5m9e-a2-m1-cC_5m9e-a2-m1-cD
30 5m9e-a2-m1-cC 68 67 0.3291 0.3824 0.3881 4.06e-08 5m9e-a2-m1-cC_5m9e-a2-m1-cD
31 4e61-a1-m1-cB 84 71 0.3544 0.3333 0.3944 1.65e-06 4e61-a1-m1-cB_4e61-a1-m1-cA
32 7d8v-a1-m2-cA 365 25 0.1392 0.0301 0.4400 0.17 7d8v-a1-m1-cA_7d8v-a1-m2-cA
33 7d8v-a1-m1-cA 365 25 0.1392 0.0301 0.4400 0.17 7d8v-a1-m1-cA_7d8v-a1-m2-cA
34 3b6u-a1-m1-cB 343 12 0.1392 0.0321 0.9167 0.91 3b6u-a1-m1-cA_3b6u-a1-m1-cB
35 1xkl-a1-m1-cB 247 46 0.1899 0.0607 0.3261 1.4 1xkl-a1-m1-cB_1xkl-a1-m1-cC
36 1xkl-a1-m1-cC 248 46 0.1899 0.0605 0.3261 1.4 1xkl-a1-m1-cB_1xkl-a1-m1-cC, 1xkl-a1-m1-cC_1xkl-a1-m1-cD
37 1y7i-a2-m1-cA 249 46 0.1899 0.0602 0.3261 1.4 1y7i-a2-m1-cA_1y7i-a2-m2-cB
38 1y7i-a2-m2-cB 253 46 0.1899 0.0593 0.3261 1.4 1y7i-a2-m1-cA_1y7i-a2-m2-cB
39 6n2g-a1-m2-cD 273 38 0.1266 0.0366 0.2632 2.1 6n2g-a1-m2-cD_6n2g-a1-m1-cA
40 6n2g-a1-m1-cA 285 38 0.1266 0.0351 0.2632 2.2 6n2g-a1-m2-cD_6n2g-a1-m1-cA
41 6ed1-a2-m1-cC 860 26 0.1392 0.0128 0.4231 2.7 6ed1-a2-m1-cB_6ed1-a2-m1-cC
42 6ed1-a2-m1-cB 860 26 0.1392 0.0128 0.4231 2.7 6ed1-a2-m1-cB_6ed1-a2-m1-cC
43 2dq0-a1-m1-cB 447 62 0.2532 0.0447 0.3226 2.7 2dq0-a1-m1-cA_2dq0-a1-m1-cB
44 2dq0-a1-m1-cA 447 62 0.2532 0.0447 0.3226 2.7 2dq0-a1-m1-cA_2dq0-a1-m1-cB
45 5doc-a1-m1-cA 197 47 0.1646 0.0660 0.2766 2.8 5doc-a1-m1-cA_5doc-a1-m1-cB
46 5doc-a1-m1-cB 202 48 0.1646 0.0644 0.2708 3.1 5doc-a1-m1-cA_5doc-a1-m1-cB
47 3b57-a1-m2-cA 176 43 0.1646 0.0739 0.3023 3.4 3b57-a1-m1-cA_3b57-a1-m2-cA
48 3b57-a1-m1-cA 176 43 0.1646 0.0739 0.3023 3.4 3b57-a1-m1-cA_3b57-a1-m2-cA
49 1xkl-a1-m1-cD 248 45 0.1899 0.0605 0.3333 3.4 1xkl-a1-m1-cC_1xkl-a1-m1-cD
50 3i00-a1-m2-cB 80 24 0.1646 0.1625 0.5417 4.1 3i00-a1-m1-cA_3i00-a1-m2-cB
51 5djn-a1-m1-cC 81 22 0.1266 0.1235 0.4545 6.0 5djn-a1-m1-cA_5djn-a1-m1-cC
52 1vl6-a1-m1-cD 371 45 0.2152 0.0458 0.3778 9.1 1vl6-a1-m1-cA_1vl6-a1-m1-cD
53 1vl6-a1-m1-cA 371 45 0.2152 0.0458 0.3778 9.1 1vl6-a1-m1-cA_1vl6-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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