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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=68)
LSNQKLTKKALIKEYTEEIERLKRDLAALEKERDFYFGKLRNIELICQENEGENDPVLQR
IVDILYAT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5jv3-a2-m1-cD 68 68 1.0000 1.0000 1.0000 7.19e-44 5jv3-a2-m1-cC_5jv3-a2-m1-cD
2 5jv3-a2-m1-cC 64 64 0.9412 1.0000 1.0000 7.62e-41 5jv3-a2-m1-cC_5jv3-a2-m1-cD
3 5jvm-a1-m1-cA 82 75 0.7794 0.6463 0.7067 5.89e-28 5jvm-a1-m1-cB_5jvm-a1-m1-cA
4 5jvm-a1-m1-cB 79 75 0.7794 0.6709 0.7067 6.32e-28 5jvm-a1-m1-cB_5jvm-a1-m1-cA
5 5jvp-a2-m3-cB 88 80 0.7500 0.5795 0.6375 5.84e-27 5jvp-a2-m1-cB_5jvp-a2-m3-cB
6 5jvp-a2-m1-cB 88 80 0.7500 0.5795 0.6375 5.84e-27 5jvp-a2-m1-cB_5jvp-a2-m3-cB
7 5jvu-a1-m1-cB 69 69 0.7206 0.7101 0.7101 1.09e-26 5jvu-a1-m1-cB_5jvu-a1-m1-cA
8 5jvu-a1-m1-cA 76 68 0.7059 0.6316 0.7059 1.47e-25 5jvu-a1-m1-cB_5jvu-a1-m1-cA
9 4xa1-a1-m1-cA 153 71 0.6765 0.3007 0.6479 4.67e-25 4xa1-a1-m1-cA_4xa1-a1-m1-cB
10 4xa1-a1-m1-cB 155 71 0.6765 0.2968 0.6479 4.91e-25 4xa1-a1-m1-cA_4xa1-a1-m1-cB
11 6pfp-a2-m1-cD 156 55 0.6471 0.2821 0.8000 7.95e-25 6pfp-a2-m1-cC_6pfp-a2-m1-cD
12 6pfp-a2-m1-cC 156 55 0.6471 0.2821 0.8000 7.95e-25 6pfp-a2-m1-cC_6pfp-a2-m1-cD
13 6pf2-a1-m1-cB 150 57 0.6618 0.3000 0.7895 1.07e-24 6pf2-a1-m1-cB_6pf2-a1-m1-cA
14 6pf2-a1-m1-cA 157 57 0.6618 0.2866 0.7895 1.48e-24 6pf2-a1-m1-cB_6pf2-a1-m1-cA
15 3mtu-a2-m1-cB 65 39 0.5294 0.5538 0.9231 4.35e-22 3mtu-a2-m1-cB_3mtu-a2-m1-cA, 3mtu-a2-m1-cD_3mtu-a2-m1-cB
16 3mtu-a2-m1-cD 64 39 0.5294 0.5625 0.9231 4.62e-22 3mtu-a2-m1-cD_3mtu-a2-m1-cB
17 3mtu-a2-m1-cA 72 39 0.5294 0.5000 0.9231 7.16e-22 3mtu-a2-m1-cB_3mtu-a2-m1-cA
18 6yf5-a2-m1-cD 82 35 0.5147 0.4268 1.0000 1.02e-20 6yf5-a2-m1-cD_6yf5-a2-m1-cC
19 6yf5-a2-m1-cC 87 35 0.5147 0.4023 1.0000 1.12e-20 6yf5-a2-m1-cD_6yf5-a2-m1-cC
20 4xa6-a2-m1-cC 100 38 0.5294 0.3600 0.9474 9.84e-20 4xa6-a2-m1-cD_4xa6-a2-m1-cC
21 4xa6-a2-m1-cD 93 37 0.5147 0.3763 0.9459 6.69e-19 4xa6-a2-m1-cD_4xa6-a2-m1-cC
22 4xa6-a1-m1-cA 149 37 0.5147 0.2349 0.9459 1.40e-18 4xa6-a1-m1-cB_4xa6-a1-m1-cA
23 4xa6-a1-m1-cB 146 36 0.4853 0.2260 0.9167 1.71e-15 4xa6-a1-m1-cB_4xa6-a1-m1-cA
24 4xa3-a1-m1-cA 142 62 0.5294 0.2535 0.5806 8.66e-15 4xa3-a1-m1-cA_4xa3-a1-m1-cB
25 5jx1-a1-m2-cA 64 62 0.6324 0.6719 0.6935 1.74e-14 5jx1-a1-m1-cA_5jx1-a1-m2-cA
26 5jx1-a1-m1-cA 64 62 0.6324 0.6719 0.6935 1.74e-14 5jx1-a1-m1-cA_5jx1-a1-m2-cA
27 4xa3-a1-m1-cB 142 61 0.5147 0.2465 0.5738 9.48e-14 4xa3-a1-m1-cA_4xa3-a1-m1-cB
28 4e61-a1-m1-cA 91 66 0.4265 0.3187 0.4394 1.38e-07 4e61-a1-m1-cB_4e61-a1-m1-cA
29 4e61-a1-m1-cB 84 64 0.3971 0.3214 0.4219 3.93e-07 4e61-a1-m1-cB_4e61-a1-m1-cA
30 5m9e-a2-m1-cD 70 47 0.3088 0.3000 0.4468 2.41e-06 5m9e-a2-m1-cC_5m9e-a2-m1-cD
31 5m9e-a2-m1-cC 68 47 0.3088 0.3088 0.4468 2.47e-06 5m9e-a2-m1-cC_5m9e-a2-m1-cD
32 5omb-a1-m1-cD 98 35 0.2059 0.1429 0.4000 2.8 5omb-a1-m1-cC_5omb-a1-m1-cD
33 5omb-a1-m1-cC 98 35 0.2059 0.1429 0.4000 2.8 5omb-a1-m1-cC_5omb-a1-m1-cD
34 6n2g-a1-m2-cD 273 36 0.1471 0.0366 0.2778 2.8 6n2g-a1-m2-cD_6n2g-a1-m1-cA
35 6n2g-a1-m1-cA 285 36 0.1471 0.0351 0.2778 3.1 6n2g-a1-m2-cD_6n2g-a1-m1-cA
36 4ina-a1-m1-cA 380 38 0.2206 0.0395 0.3947 3.4 4ina-a1-m1-cA_4ina-a1-m1-cB
37 4ina-a1-m1-cB 383 38 0.2206 0.0392 0.3947 3.4 4ina-a1-m1-cA_4ina-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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