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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
LSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRA
VNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1utu-a1-m1-cA 96 96 1.0000 1.0000 1.0000 3.78e-65 1utu-a1-m1-cB_1utu-a1-m1-cA
2 1utu-a1-m1-cB 95 94 0.9792 0.9895 1.0000 5.58e-64 1utu-a1-m1-cB_1utu-a1-m1-cA
3 7z8f-a1-m1-cf 4579 38 0.1771 0.0037 0.4474 7.4 7z8f-a1-m1-ce_7z8f-a1-m1-cf, 7z8f-a1-m1-cm_7z8f-a1-m1-cf
4 7z8f-a1-m1-ce 4579 38 0.1771 0.0037 0.4474 7.4 7z8f-a1-m1-ce_7z8f-a1-m1-cf
5 7z8f-a1-m1-cn 4566 38 0.1771 0.0037 0.4474 7.4 7z8f-a1-m1-cm_7z8f-a1-m1-cn
6 7z8f-a1-m1-cm 4562 38 0.1771 0.0037 0.4474 7.7 7z8f-a1-m1-cm_7z8f-a1-m1-cf, 7z8f-a1-m1-cm_7z8f-a1-m1-cn
7 1nkt-a2-m2-cB 836 24 0.1146 0.0132 0.4583 8.8 1nkt-a2-m1-cB_1nkt-a2-m2-cB, 1nkt-a2-m2-cA_1nkt-a2-m2-cB
8 1nkt-a2-m2-cA 836 24 0.1146 0.0132 0.4583 8.8 1nkt-a2-m2-cA_1nkt-a2-m2-cB
9 1nkt-a2-m1-cB 836 24 0.1146 0.0132 0.4583 8.8 1nkt-a2-m1-cB_1nkt-a2-m2-cB

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Reference:
Jacob Schwartz et al.

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