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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=66)
LTCVKSNSIWFPTSEDCPDGQNLCFKRWQYISPRMYDFTRGCAATCPKPTNVRETIRCCG
TDKCNK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3neq-a3-m2-cA 66 66 1.0000 1.0000 1.0000 2.56e-45 3neq-a3-m1-cB_3neq-a3-m2-cA
2 3neq-a3-m1-cB 66 66 1.0000 1.0000 1.0000 2.56e-45 3neq-a3-m1-cB_3neq-a3-m2-cA
3 4do8-a3-m2-cB 66 66 0.7576 0.7576 0.7576 5.28e-31 4do8-a3-m1-cA_4do8-a3-m2-cB, 4do8-a3-m1-cB_4do8-a3-m2-cB, 4do8-a3-m2-cA_4do8-a3-m2-cB
4 4do8-a3-m2-cA 66 66 0.7576 0.7576 0.7576 5.28e-31 4do8-a3-m2-cA_4do8-a3-m2-cB
5 4do8-a3-m1-cB 66 66 0.7576 0.7576 0.7576 5.28e-31 4do8-a3-m1-cB_4do8-a3-m2-cB
6 4do8-a3-m1-cA 66 66 0.7576 0.7576 0.7576 5.28e-31 4do8-a3-m1-cA_4do8-a3-m2-cB
7 1ff4-a2-m3-cA 65 65 0.6364 0.6462 0.6462 1.33e-25 1ff4-a2-m1-cA_1ff4-a2-m3-cA
8 1ff4-a2-m1-cA 65 65 0.6364 0.6462 0.6462 1.33e-25 1ff4-a2-m1-cA_1ff4-a2-m3-cA
9 1ff4-a1-m2-cA 65 65 0.6364 0.6462 0.6462 1.33e-25 1ff4-a1-m1-cA_1ff4-a1-m2-cA
10 1ff4-a1-m1-cA 65 65 0.6364 0.6462 0.6462 1.33e-25 1ff4-a1-m1-cA_1ff4-a1-m2-cA
11 7c28-a1-m1-cA 65 66 0.4848 0.4923 0.4848 8.11e-18 7c28-a1-m1-cB_7c28-a1-m1-cA
12 7c28-a1-m1-cB 59 66 0.4697 0.5254 0.4697 3.83e-15 7c28-a1-m1-cB_7c28-a1-m1-cA
13 4zqy-a2-m1-cC 65 64 0.4394 0.4462 0.4531 3.78e-12 4zqy-a2-m1-cB_4zqy-a2-m1-cC
14 4zqy-a2-m1-cB 65 64 0.4394 0.4462 0.4531 3.78e-12 4zqy-a2-m1-cB_4zqy-a2-m1-cC
15 1kxi-a1-m1-cB 62 51 0.3485 0.3710 0.4510 1.47e-08 1kxi-a1-m1-cA_1kxi-a1-m1-cB
16 1kxi-a1-m1-cA 62 51 0.3485 0.3710 0.4510 1.47e-08 1kxi-a1-m1-cA_1kxi-a1-m1-cB
17 1cdt-a1-m1-cB 60 62 0.3485 0.3833 0.3710 4.99e-08 1cdt-a1-m1-cA_1cdt-a1-m1-cB
18 1cdt-a1-m1-cA 60 62 0.3485 0.3833 0.3710 4.99e-08 1cdt-a1-m1-cA_1cdt-a1-m1-cB
19 1tgx-a4-m15-cC 60 62 0.3788 0.4167 0.4032 8.07e-08 1tgx-a4-m14-cB_1tgx-a4-m15-cC
20 1tgx-a4-m14-cB 60 62 0.3788 0.4167 0.4032 8.07e-08 1tgx-a4-m14-cB_1tgx-a4-m15-cC
21 1tgx-a3-m9-cA 60 62 0.3788 0.4167 0.4032 8.07e-08 1tgx-a3-m10-cB_1tgx-a3-m9-cA
22 1tgx-a3-m10-cB 60 62 0.3788 0.4167 0.4032 8.07e-08 1tgx-a3-m10-cB_1tgx-a3-m9-cA
23 1tgx-a1-m4-cC 60 62 0.3788 0.4167 0.4032 8.07e-08 1tgx-a1-m4-cA_1tgx-a1-m4-cC
24 1tgx-a1-m4-cA 60 62 0.3788 0.4167 0.4032 8.07e-08 1tgx-a1-m4-cA_1tgx-a1-m4-cC
25 1xt3-a1-m2-cB 60 65 0.3636 0.4000 0.3692 2.33e-07 1xt3-a1-m1-cA_1xt3-a1-m2-cB
26 1xt3-a1-m1-cA 60 65 0.3636 0.4000 0.3692 2.33e-07 1xt3-a1-m1-cA_1xt3-a1-m2-cB
27 4lft-a1-m1-cB 72 63 0.4242 0.3889 0.4444 3.23e-07 4lft-a1-m1-cA_4lft-a1-m1-cB
28 3vts-a1-m1-cB 61 52 0.3182 0.3443 0.4038 5.22e-07 3vts-a1-m1-cA_3vts-a1-m1-cB
29 3vts-a1-m1-cA 61 52 0.3182 0.3443 0.4038 5.22e-07 3vts-a1-m1-cA_3vts-a1-m1-cB
30 4lft-a1-m1-cA 64 62 0.4091 0.4219 0.4355 7.40e-07 4lft-a1-m1-cA_4lft-a1-m1-cB
31 2abx-a1-m1-cB 74 53 0.3485 0.3108 0.4340 1.68e-06 2abx-a1-m1-cA_2abx-a1-m1-cB
32 2abx-a1-m1-cA 74 53 0.3485 0.3108 0.4340 1.68e-06 2abx-a1-m1-cA_2abx-a1-m1-cB
33 4om4-a1-m1-cE 60 65 0.3636 0.4000 0.3692 3.27e-06 4om4-a1-m1-cA_4om4-a1-m1-cE, 4om4-a1-m1-cC_4om4-a1-m1-cE, 4om4-a1-m1-cD_4om4-a1-m1-cE
34 4om4-a1-m1-cD 60 65 0.3636 0.4000 0.3692 3.27e-06 4om4-a1-m1-cD_4om4-a1-m1-cE
35 4om4-a1-m1-cC 60 65 0.3636 0.4000 0.3692 3.27e-06 4om4-a1-m1-cA_4om4-a1-m1-cC, 4om4-a1-m1-cC_4om4-a1-m1-cE
36 4om4-a1-m1-cB 60 65 0.3636 0.4000 0.3692 3.27e-06 4om4-a1-m1-cA_4om4-a1-m1-cB
37 4om4-a1-m1-cA 60 65 0.3636 0.4000 0.3692 3.27e-06 4om4-a1-m1-cA_4om4-a1-m1-cB, 4om4-a1-m1-cA_4om4-a1-m1-cC, 4om4-a1-m1-cA_4om4-a1-m1-cE
38 3hh7-a1-m1-cB 65 64 0.3636 0.3692 0.3750 6.13e-06 3hh7-a1-m1-cA_3hh7-a1-m1-cB
39 3hh7-a1-m1-cA 65 64 0.3636 0.3692 0.3750 6.13e-06 3hh7-a1-m1-cA_3hh7-a1-m1-cB
40 4om5-a1-m1-cC 60 61 0.3333 0.3667 0.3607 6.86e-06 4om5-a1-m1-cA_4om5-a1-m1-cC
41 4om5-a1-m1-cB 60 61 0.3333 0.3667 0.3607 6.86e-06 4om5-a1-m1-cA_4om5-a1-m1-cB
42 4om5-a1-m1-cA 60 61 0.3333 0.3667 0.3607 6.86e-06 4om5-a1-m1-cA_4om5-a1-m1-cB, 4om5-a1-m1-cA_4om5-a1-m1-cC
43 1v6p-a1-m1-cB 62 66 0.4091 0.4355 0.4091 4.86e-05 1v6p-a1-m1-cA_1v6p-a1-m1-cB
44 1v6p-a1-m1-cA 62 66 0.4091 0.4355 0.4091 4.86e-05 1v6p-a1-m1-cA_1v6p-a1-m1-cB
45 4aea-a2-m2-cB 67 55 0.3636 0.3582 0.4364 6.76e-05 4aea-a2-m1-cB_4aea-a2-m2-cB
46 4aea-a2-m1-cB 67 55 0.3636 0.3582 0.4364 6.76e-05 4aea-a2-m1-cB_4aea-a2-m2-cB
47 6zfm-a1-m1-cD 71 55 0.3636 0.3380 0.4364 9.40e-05 6zfm-a1-m1-cA_6zfm-a1-m1-cD
48 6zfm-a1-m1-cA 71 55 0.3636 0.3380 0.4364 9.40e-05 6zfm-a1-m1-cA_6zfm-a1-m1-cD, 6zfm-a1-m1-cE_6zfm-a1-m1-cA
49 2ctx-a1-m2-cA 71 55 0.3636 0.3380 0.4364 9.40e-05 2ctx-a1-m1-cA_2ctx-a1-m2-cA
50 2ctx-a1-m1-cA 71 55 0.3636 0.3380 0.4364 9.40e-05 2ctx-a1-m1-cA_2ctx-a1-m2-cA
51 6zfm-a1-m1-cE 65 54 0.3485 0.3538 0.4259 2.39e-04 6zfm-a1-m1-cE_6zfm-a1-m1-cA
52 4bdt-a2-m6-cB 61 46 0.2424 0.2623 0.3478 1.5 4bdt-a2-m4-cB_4bdt-a2-m6-cB
53 4bdt-a2-m4-cB 61 46 0.2424 0.2623 0.3478 1.5 4bdt-a2-m4-cB_4bdt-a2-m6-cB
54 1fsc-a1-m2-cA 61 46 0.2424 0.2623 0.3478 1.5 1fsc-a1-m1-cA_1fsc-a1-m2-cA
55 1fsc-a1-m1-cA 61 46 0.2424 0.2623 0.3478 1.5 1fsc-a1-m1-cA_1fsc-a1-m2-cA
56 4rud-a1-m1-cB 58 51 0.2576 0.2931 0.3333 1.7 4rud-a1-m1-cA_4rud-a1-m1-cB
57 4rud-a1-m1-cA 58 51 0.2576 0.2931 0.3333 1.7 4rud-a1-m1-cA_4rud-a1-m1-cB
58 5xwe-a1-m1-cA 51 54 0.2576 0.3333 0.3148 2.8 5xwe-a1-m1-cB_5xwe-a1-m1-cA
59 5xwe-a1-m1-cB 50 50 0.2424 0.3200 0.3200 6.6 5xwe-a1-m1-cB_5xwe-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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