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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=50)
LTPNDIHNKTFTKSFRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2wuj-a1-m1-cB 50 50 1.0000 1.0000 1.0000 2.18e-31 2wuj-a1-m1-cA_2wuj-a1-m1-cB
2 2wuj-a1-m1-cA 50 50 1.0000 1.0000 1.0000 2.18e-31 2wuj-a1-m1-cA_2wuj-a1-m1-cB
3 6lfa-a1-m2-cB 62 53 0.4200 0.3387 0.3962 3.73e-07 6lfa-a1-m1-cB_6lfa-a1-m2-cB, 6lfa-a1-m2-cB_6lfa-a1-m2-cA
4 6lfa-a1-m1-cB 62 53 0.4200 0.3387 0.3962 3.73e-07 6lfa-a1-m1-cB_6lfa-a1-m2-cB
5 6lfa-a1-m2-cA 70 53 0.4200 0.3000 0.3962 5.51e-07 6lfa-a1-m1-cA_6lfa-a1-m2-cA, 6lfa-a1-m2-cB_6lfa-a1-m2-cA
6 6lfa-a1-m1-cA 70 53 0.4200 0.3000 0.3962 5.51e-07 6lfa-a1-m1-cA_6lfa-a1-m2-cA
7 6gqa-a1-m1-cD 58 35 0.3200 0.2759 0.4571 3.76e-04 6gqa-a1-m1-cC_6gqa-a1-m1-cD
8 6gqa-a1-m1-cC 58 35 0.3200 0.2759 0.4571 3.76e-04 6gqa-a1-m1-cC_6gqa-a1-m1-cB, 6gqa-a1-m1-cC_6gqa-a1-m1-cD
9 6gqa-a1-m1-cB 60 35 0.3200 0.2667 0.4571 3.83e-04 6gqa-a1-m1-cC_6gqa-a1-m1-cB
10 4ug1-a1-m1-cA 70 47 0.3600 0.2571 0.3830 5.70e-04 4ug1-a1-m1-cA_4ug1-a1-m1-cB
11 4ug1-a1-m1-cB 73 47 0.3600 0.2466 0.3830 6.72e-04 4ug1-a1-m1-cA_4ug1-a1-m1-cB
12 7o39-a1-m1-cB 51 50 0.3600 0.3529 0.3600 0.001 7o39-a1-m1-cA_7o39-a1-m1-cB
13 7o39-a1-m1-cA 51 50 0.3600 0.3529 0.3600 0.001 7o39-a1-m1-cA_7o39-a1-m1-cB
14 6gp7-a1-m1-cA 58 35 0.2800 0.2414 0.4000 0.002 6gp7-a1-m1-cA_6gp7-a1-m1-cB
15 6gp7-a1-m1-cB 59 35 0.2800 0.2373 0.4000 0.002 6gp7-a1-m1-cA_6gp7-a1-m1-cB
16 2vvm-a1-m1-cB 478 40 0.2800 0.0293 0.3500 0.11 2vvm-a1-m1-cB_2vvm-a1-m1-cA
17 2vvm-a1-m1-cA 481 40 0.2800 0.0291 0.3500 0.11 2vvm-a1-m1-cB_2vvm-a1-m1-cA
18 2fzt-a1-m1-cB 77 37 0.2600 0.1688 0.3514 1.6 2fzt-a1-m1-cA_2fzt-a1-m1-cB
19 2fzt-a1-m1-cA 76 37 0.2600 0.1711 0.3514 1.6 2fzt-a1-m1-cA_2fzt-a1-m1-cB
20 1sjj-a1-m1-cB 863 43 0.2600 0.0151 0.3023 1.9 1sjj-a1-m1-cA_1sjj-a1-m1-cB
21 1sjj-a1-m1-cA 863 43 0.2600 0.0151 0.3023 1.9 1sjj-a1-m1-cA_1sjj-a1-m1-cB
22 3wyd-a1-m1-cB 191 24 0.2000 0.0524 0.4167 2.9 3wyd-a1-m1-cB_3wyd-a1-m1-cA
23 3wyd-a1-m1-cA 193 24 0.2000 0.0518 0.4167 2.9 3wyd-a1-m1-cB_3wyd-a1-m1-cA
24 7egq-a1-m1-cN 926 23 0.2000 0.0108 0.4348 7.1 7egq-a1-m1-cA_7egq-a1-m1-cN
25 7egq-a1-m1-cA 926 23 0.2000 0.0108 0.4348 7.1 7egq-a1-m1-cA_7egq-a1-m1-cN
26 7re3-a1-m1-cG 927 23 0.2000 0.0108 0.4348 7.2 7re3-a1-m1-cA_7re3-a1-m1-cG
27 7re3-a1-m1-cA 927 23 0.2000 0.0108 0.4348 7.2 7re3-a1-m1-cA_7re3-a1-m1-cG

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Reference:
Jacob Schwartz et al.

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