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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
LVPRGSHLESYAFNKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQ
QKELEKVCNPIITKLYQSAGGPGG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1ud0-a4-m1-cC 84 84 1.0000 1.0000 1.0000 3.04e-58 1ud0-a4-m3-cA_1ud0-a4-m1-cC
2 1ud0-a4-m3-cA 81 81 0.9643 1.0000 1.0000 8.86e-56 1ud0-a4-m1-cD_1ud0-a4-m3-cA, 1ud0-a4-m3-cA_1ud0-a4-m1-cC, 1ud0-a4-m3-cB_1ud0-a4-m3-cA
3 1ud0-a4-m3-cB 79 79 0.9405 1.0000 1.0000 4.21e-54 1ud0-a4-m1-cD_1ud0-a4-m3-cB, 1ud0-a4-m3-cB_1ud0-a4-m3-cA
4 1ud0-a4-m1-cD 76 76 0.9048 1.0000 1.0000 3.10e-51 1ud0-a4-m1-cD_1ud0-a4-m3-cA, 1ud0-a4-m1-cD_1ud0-a4-m3-cB
5 2p32-a7-m1-cF 82 81 0.7262 0.7439 0.7531 2.39e-36 2p32-a7-m1-cA_2p32-a7-m1-cF, 2p32-a7-m1-cE_2p32-a7-m1-cF
6 2p32-a7-m1-cE 82 81 0.7262 0.7439 0.7531 2.39e-36 2p32-a7-m1-cE_2p32-a7-m1-cF
7 2p32-a7-m1-cA 82 81 0.7262 0.7439 0.7531 2.39e-36 2p32-a7-m1-cA_2p32-a7-m1-cF
8 3lof-a3-m1-cE 81 80 0.6071 0.6296 0.6375 1.49e-31 3lof-a3-m1-cF_3lof-a3-m1-cE
9 4po2-a3-m2-cB 215 71 0.5952 0.2326 0.7042 1.76e-30 4po2-a3-m1-cB_4po2-a3-m2-cB, 4po2-a3-m2-cB_4po2-a3-m1-cA, 4po2-a3-m2-cB_4po2-a3-m2-cA
10 4po2-a3-m1-cB 215 71 0.5952 0.2326 0.7042 1.76e-30 4po2-a3-m1-cB_4po2-a3-m2-cB
11 4po2-a3-m2-cA 228 77 0.6071 0.2237 0.6623 2.72e-30 4po2-a3-m1-cA_4po2-a3-m2-cA, 4po2-a3-m2-cB_4po2-a3-m2-cA
12 4po2-a3-m1-cA 228 77 0.6071 0.2237 0.6623 2.72e-30 4po2-a3-m1-cA_4po2-a3-m2-cA, 4po2-a3-m2-cB_4po2-a3-m1-cA
13 3lof-a3-m1-cF 79 78 0.5833 0.6203 0.6282 1.43e-29 3lof-a3-m1-cF_3lof-a3-m1-cE
14 6asy-a1-m1-cB 606 71 0.3690 0.0512 0.4366 4.10e-10 6asy-a1-m1-cA_6asy-a1-m1-cB
15 6asy-a1-m1-cA 606 71 0.3690 0.0512 0.4366 4.10e-10 6asy-a1-m1-cA_6asy-a1-m1-cB
16 5ejw-a2-m2-cA 80 56 0.2381 0.2500 0.3571 0.26 5ejw-a2-m1-cA_5ejw-a2-m2-cA
17 5ejw-a2-m1-cA 80 56 0.2381 0.2500 0.3571 0.26 5ejw-a2-m1-cA_5ejw-a2-m2-cA
18 4fxs-a1-m4-cA 452 62 0.1905 0.0354 0.2581 1.4 4fxs-a1-m2-cA_4fxs-a1-m4-cA
19 4fxs-a1-m2-cA 452 62 0.1905 0.0354 0.2581 1.4 4fxs-a1-m2-cA_4fxs-a1-m4-cA
20 2otn-a1-m1-cB 288 15 0.1071 0.0312 0.6000 2.4 2otn-a1-m1-cB_2otn-a1-m1-cA
21 1pyo-a1-m1-cB 98 57 0.2024 0.1735 0.2982 2.5 1pyo-a1-m1-cB_1pyo-a1-m1-cD
22 1pyo-a1-m1-cD 99 57 0.2024 0.1717 0.2982 2.5 1pyo-a1-m1-cB_1pyo-a1-m1-cD
23 3ifs-a5-m2-cF 440 42 0.1786 0.0341 0.3571 4.3 3ifs-a5-m1-cF_3ifs-a5-m2-cF, 3ifs-a5-m2-cF_3ifs-a5-m2-cE
24 3ifs-a5-m1-cF 440 42 0.1786 0.0341 0.3571 4.3 3ifs-a5-m1-cF_3ifs-a5-m2-cF
25 3ifs-a5-m2-cE 441 42 0.1786 0.0340 0.3571 4.3 3ifs-a5-m2-cF_3ifs-a5-m2-cE
26 1wwr-a3-m1-cC 160 44 0.1905 0.1000 0.3636 5.0 1wwr-a3-m1-cD_1wwr-a3-m1-cC
27 2v4h-a1-m2-cA 98 44 0.2024 0.1735 0.3864 5.3 2v4h-a1-m1-cA_2v4h-a1-m2-cA, 2v4h-a1-m2-cB_2v4h-a1-m2-cA
28 2v4h-a1-m1-cA 98 44 0.2024 0.1735 0.3864 5.3 2v4h-a1-m1-cA_2v4h-a1-m2-cA, 2v4h-a1-m2-cB_2v4h-a1-m1-cA
29 1z6a-a3-m3-cA 480 13 0.1071 0.0187 0.6923 7.9 1z6a-a3-m1-cA_1z6a-a3-m3-cA
30 1z6a-a3-m1-cA 480 13 0.1071 0.0187 0.6923 7.9 1z6a-a3-m1-cA_1z6a-a3-m3-cA
31 1z6a-a2-m2-cA 480 13 0.1071 0.0187 0.6923 7.9 1z6a-a2-m1-cA_1z6a-a2-m2-cA
32 1z6a-a2-m1-cA 480 13 0.1071 0.0187 0.6923 7.9 1z6a-a2-m1-cA_1z6a-a2-m2-cA
33 2otn-a1-m1-cA 293 14 0.0952 0.0273 0.5714 9.1 2otn-a1-m1-cB_2otn-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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