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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
MAKIKSLSAAEYLKEMADETNIKVQDIRLVVTSLQKVLAKELATTGEVRLFDIGKFKLVT
TKPRTGINPKTKQKIQIPAGKKIKLTVSKILTDAVDSHK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ndp-a1-m1-cB 99 99 1.0000 1.0000 1.0000 1.99e-66 2ndp-a1-m1-cA_2ndp-a1-m1-cB
2 2ndp-a1-m1-cA 99 99 1.0000 1.0000 1.0000 1.99e-66 2ndp-a1-m1-cA_2ndp-a1-m1-cB
3 3rhi-a2-m1-cC 90 89 0.2626 0.2889 0.2921 6.02e-06 3rhi-a2-m1-cD_3rhi-a2-m1-cC
4 4qjn-a2-m1-cD 90 70 0.2727 0.3000 0.3857 1.61e-05 4qjn-a2-m1-cB_4qjn-a2-m1-cD
5 4qjn-a2-m1-cB 90 70 0.2727 0.3000 0.3857 1.61e-05 4qjn-a2-m1-cB_4qjn-a2-m1-cD
6 1hue-a1-m1-cB 90 89 0.2323 0.2556 0.2584 1.46e-04 1hue-a1-m1-cA_1hue-a1-m1-cB
7 1hue-a1-m1-cA 90 89 0.2323 0.2556 0.2584 1.46e-04 1hue-a1-m1-cA_1hue-a1-m1-cB
8 1p71-a1-m1-cA 94 93 0.2222 0.2340 0.2366 1.69e-04 1p71-a1-m1-cB_1p71-a1-m1-cA
9 1p71-a1-m1-cB 93 93 0.2222 0.2366 0.2366 1.75e-04 1p71-a1-m1-cB_1p71-a1-m1-cA
10 5l8z-a1-m2-cA 95 52 0.2020 0.2105 0.3846 7.47e-04 5l8z-a1-m1-cA_5l8z-a1-m2-cA
11 5l8z-a1-m1-cA 95 52 0.2020 0.2105 0.3846 7.47e-04 5l8z-a1-m1-cA_5l8z-a1-m2-cA
12 5lvt-a2-m1-cD 91 85 0.2525 0.2747 0.2941 8.18e-04 5lvt-a2-m1-cB_5lvt-a2-m1-cD
13 5lvt-a2-m1-cB 91 85 0.2525 0.2747 0.2941 8.18e-04 5lvt-a2-m1-cB_5lvt-a2-m1-cD
14 6o8q-a1-m1-cH 91 48 0.1919 0.2088 0.3958 0.003 6o8q-a1-m1-cG_6o8q-a1-m1-cH
15 6o8q-a1-m1-cG 91 48 0.1919 0.2088 0.3958 0.003 6o8q-a1-m1-cG_6o8q-a1-m1-cH
16 1exe-a1-m1-cB 99 71 0.1717 0.1717 0.2394 0.018 1exe-a1-m1-cA_1exe-a1-m1-cB
17 1exe-a1-m1-cA 99 71 0.1717 0.1717 0.2394 0.018 1exe-a1-m1-cA_1exe-a1-m1-cB
18 6n2l-a1-m2-cA 88 86 0.2424 0.2727 0.2791 0.018 6n2l-a1-m1-cA_6n2l-a1-m2-cA
19 6n2l-a1-m1-cA 88 86 0.2424 0.2727 0.2791 0.018 6n2l-a1-m1-cA_6n2l-a1-m2-cA
20 1wtu-a1-m1-cB 99 71 0.1717 0.1717 0.2394 0.067 1wtu-a1-m1-cA_1wtu-a1-m1-cB
21 1wtu-a1-m1-cA 99 71 0.1717 0.1717 0.2394 0.067 1wtu-a1-m1-cA_1wtu-a1-m1-cB
22 5eka-a1-m2-cA 85 61 0.1717 0.2000 0.2787 0.12 5eka-a1-m1-cA_5eka-a1-m2-cA
23 5eka-a1-m1-cA 85 61 0.1717 0.2000 0.2787 0.12 5eka-a1-m1-cA_5eka-a1-m2-cA
24 7kav-a2-m1-cC 583 38 0.1616 0.0274 0.4211 3.4 7kav-a2-m1-cA_7kav-a2-m1-cC
25 7kav-a2-m1-cA 583 38 0.1616 0.0274 0.4211 3.4 7kav-a2-m1-cA_7kav-a2-m1-cC
26 4q3k-a1-m2-cA 241 46 0.1717 0.0705 0.3696 6.3 4q3k-a1-m2-cA_4q3k-a1-m2-cB
27 4q3k-a1-m1-cA 241 46 0.1717 0.0705 0.3696 6.3 4q3k-a1-m1-cA_4q3k-a1-m2-cB
28 4q3k-a1-m2-cB 242 46 0.1717 0.0702 0.3696 6.4 4q3k-a1-m1-cA_4q3k-a1-m2-cB, 4q3k-a1-m2-cA_4q3k-a1-m2-cB
29 4xhq-a1-m2-cA 388 44 0.1616 0.0412 0.3636 8.5 4xhq-a1-m1-cA_4xhq-a1-m2-cA
30 4xhq-a1-m1-cA 388 44 0.1616 0.0412 0.3636 8.5 4xhq-a1-m1-cA_4xhq-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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