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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
MAQHSKYSDAQLSAIVNDMIAVLEKHKAPVDLSLIALGNMASNLLTTSVPQTQCEALAQA
FSNSLINAVKTRLEHHHHHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2juz-a1-m1-cB 80 80 1.0000 1.0000 1.0000 7.49e-54 2juz-a1-m1-cA_2juz-a1-m1-cB
2 2juz-a1-m1-cA 80 80 1.0000 1.0000 1.0000 7.49e-54 2juz-a1-m1-cA_2juz-a1-m1-cB
3 2jrx-a1-m1-cB 83 77 0.4625 0.4458 0.4805 2.34e-18 2jrx-a1-m1-cA_2jrx-a1-m1-cB
4 2jrx-a1-m1-cA 83 77 0.4625 0.4458 0.4805 2.34e-18 2jrx-a1-m1-cA_2jrx-a1-m1-cB
5 2qti-a1-m2-cA 66 67 0.3750 0.4545 0.4478 3.24e-13 2qti-a1-m1-cA_2qti-a1-m2-cA
6 2qti-a1-m1-cA 66 67 0.3750 0.4545 0.4478 3.24e-13 2qti-a1-m1-cA_2qti-a1-m2-cA
7 2jpq-a1-m1-cB 83 71 0.3250 0.3133 0.3662 1.81e-10 2jpq-a1-m1-cA_2jpq-a1-m1-cB
8 2jpq-a1-m1-cA 83 71 0.3250 0.3133 0.3662 1.81e-10 2jpq-a1-m1-cA_2jpq-a1-m1-cB
9 2ota-a1-m1-cA 66 71 0.3125 0.3788 0.3521 1.17e-06 2ota-a1-m1-cB_2ota-a1-m1-cA
10 4xxv-a1-m1-cB 355 41 0.1750 0.0394 0.3415 1.8 4xxv-a1-m1-cB_4xxv-a1-m1-cA
11 4xxv-a1-m1-cA 356 41 0.1750 0.0393 0.3415 2.1 4xxv-a1-m1-cB_4xxv-a1-m1-cA
12 6iog-a1-m1-cB 374 8 0.1000 0.0214 1.0000 2.9 6iog-a1-m1-cA_6iog-a1-m1-cB
13 4ic6-a1-m2-cA 340 10 0.1000 0.0235 0.8000 3.2 4ic6-a1-m2-cC_4ic6-a1-m2-cA
14 4ic6-a1-m1-cA 340 10 0.1000 0.0235 0.8000 3.2 4ic6-a1-m2-cB_4ic6-a1-m1-cA
15 4ic6-a1-m2-cC 335 10 0.1000 0.0239 0.8000 3.5 4ic6-a1-m2-cC_4ic6-a1-m2-cA
16 4z6k-a1-m1-cC 345 9 0.1000 0.0232 0.8889 10.0 4z6k-a1-m1-cD_4z6k-a1-m1-cC
17 4z6k-a1-m1-cA 345 9 0.1000 0.0232 0.8889 10.0 4z6k-a1-m1-cD_4z6k-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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