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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGY

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6iiq-a1-m1-cA 99 99 1.0000 1.0000 1.0000 4.26e-69 6iiq-a1-m1-cB_6iiq-a1-m1-cA
2 6iiq-a1-m1-cB 98 98 0.9899 1.0000 1.0000 4.67e-68 6iiq-a1-m1-cB_6iiq-a1-m1-cA
3 2nlu-a1-m1-cB 100 100 0.8081 0.8000 0.8000 6.41e-55 2nlu-a1-m1-cA_2nlu-a1-m1-cB
4 2nlu-a1-m1-cA 100 100 0.8081 0.8000 0.8000 6.41e-55 2nlu-a1-m1-cA_2nlu-a1-m1-cB
5 5xsk-a1-m1-cB 91 89 0.7576 0.8242 0.8427 3.22e-52 5xsk-a1-m1-cA_5xsk-a1-m1-cB
6 5xsk-a1-m1-cA 90 89 0.7576 0.8333 0.8427 4.85e-52 5xsk-a1-m1-cA_5xsk-a1-m1-cB
7 3qby-a1-m1-cA 93 92 0.7273 0.7742 0.7826 2.64e-50 3qby-a1-m1-cB_3qby-a1-m1-cA, 3qby-a1-m1-cC_3qby-a1-m1-cA
8 3qby-a1-m1-cB 83 89 0.6768 0.8072 0.7528 2.31e-43 3qby-a1-m1-cB_3qby-a1-m1-cA
9 3qby-a1-m1-cC 76 84 0.6667 0.8684 0.7857 3.54e-41 3qby-a1-m1-cC_3qby-a1-m1-cA
10 4rxj-a1-m2-cA 108 80 0.2424 0.2222 0.3000 4.88e-05 4rxj-a1-m1-cA_4rxj-a1-m2-cA
11 4rxj-a1-m1-cA 108 80 0.2424 0.2222 0.3000 4.88e-05 4rxj-a1-m1-cA_4rxj-a1-m2-cA
12 5nv2-a1-m1-cB 133 23 0.1111 0.0827 0.4783 0.11 5nv2-a1-m1-cA_5nv2-a1-m1-cB
13 5nv2-a1-m1-cA 133 23 0.1111 0.0827 0.4783 0.11 5nv2-a1-m1-cA_5nv2-a1-m1-cB
14 3c02-a1-m4-cA 242 87 0.2626 0.1074 0.2989 0.74 3c02-a1-m2-cA_3c02-a1-m4-cA
15 3c02-a1-m2-cA 242 87 0.2626 0.1074 0.2989 0.74 3c02-a1-m2-cA_3c02-a1-m4-cA
16 5ijg-a1-m2-cB 403 35 0.1515 0.0372 0.4286 1.8 5ijg-a1-m1-cB_5ijg-a1-m2-cB
17 5ijg-a1-m1-cB 403 35 0.1515 0.0372 0.4286 1.8 5ijg-a1-m1-cB_5ijg-a1-m2-cB
18 7cmg-a1-m1-cB 480 35 0.1515 0.0312 0.4286 2.0 7cmg-a1-m1-cB_7cmg-a1-m1-cA
19 7cmg-a1-m1-cA 487 35 0.1515 0.0308 0.4286 2.1 7cmg-a1-m1-cB_7cmg-a1-m1-cA
20 6se3-a3-m1-cF 528 38 0.1313 0.0246 0.3421 8.3 6se3-a3-m1-cC_6se3-a3-m1-cF
21 6se3-a3-m1-cC 528 38 0.1313 0.0246 0.3421 8.3 6se3-a3-m1-cC_6se3-a3-m1-cF
22 6ey5-a1-m1-cB 293 35 0.1515 0.0512 0.4286 8.6 6ey5-a1-m1-cA_6ey5-a1-m1-cB
23 6ey5-a1-m1-cA 292 35 0.1515 0.0514 0.4286 8.8 6ey5-a1-m1-cA_6ey5-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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