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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
MDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRL
CDELERALAQAFPGLQATIHVEPEGERKR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3byr-a1-m2-cA 89 89 1.0000 1.0000 1.0000 6.30e-59 3byr-a1-m1-cA_3byr-a1-m2-cA
2 3byr-a1-m1-cA 89 89 1.0000 1.0000 1.0000 6.30e-59 3byr-a1-m1-cA_3byr-a1-m2-cA
3 3byp-a1-m1-cB 82 82 0.9213 1.0000 1.0000 9.60e-54 3byp-a1-m1-cA_3byp-a1-m1-cB
4 3byp-a1-m1-cA 82 82 0.9213 1.0000 1.0000 9.60e-54 3byp-a1-m1-cA_3byp-a1-m1-cB
5 3h90-a1-m1-cC 283 85 0.3258 0.1025 0.3412 2.97e-12 3h90-a1-m1-cA_3h90-a1-m1-cC
6 3h90-a1-m1-cA 283 85 0.3258 0.1025 0.3412 2.97e-12 3h90-a1-m1-cA_3h90-a1-m1-cC
7 8f6i-a1-m1-cA 274 83 0.3146 0.1022 0.3373 6.23e-10 8f6i-a1-m1-cA_8f6i-a1-m1-cB
8 8f6i-a1-m1-cB 276 83 0.3146 0.1014 0.3373 6.28e-10 8f6i-a1-m1-cA_8f6i-a1-m1-cB
9 3j1z-a1-m9-cQ 296 83 0.3146 0.0946 0.3373 6.66e-10 3j1z-a1-m1-cP_3j1z-a1-m9-cQ, 3j1z-a1-m12-cP_3j1z-a1-m9-cQ, 3j1z-a1-m9-cP_3j1z-a1-m9-cQ
10 3j1z-a1-m9-cP 296 83 0.3146 0.0946 0.3373 6.66e-10 3j1z-a1-m14-cP_3j1z-a1-m9-cP, 3j1z-a1-m9-cP_3j1z-a1-m9-cQ
11 3j1z-a1-m14-cP 296 83 0.3146 0.0946 0.3373 6.66e-10 3j1z-a1-m14-cP_3j1z-a1-m9-cP
12 3j1z-a1-m12-cP 296 83 0.3146 0.0946 0.3373 6.66e-10 3j1z-a1-m12-cP_3j1z-a1-m9-cQ
13 3j1z-a1-m1-cP 296 83 0.3146 0.0946 0.3373 6.66e-10 3j1z-a1-m1-cP_3j1z-a1-m9-cQ
14 8f6k-a1-m1-cC 279 83 0.3034 0.0968 0.3253 3.42e-08 8f6k-a1-m1-cC_8f6k-a1-m1-cD
15 8f6k-a1-m1-cA 279 83 0.3034 0.0968 0.3253 3.42e-08 8f6k-a1-m1-cA_8f6k-a1-m1-cD
16 8f6k-a1-m1-cD 287 83 0.3034 0.0941 0.3253 3.47e-08 8f6k-a1-m1-cA_8f6k-a1-m1-cD, 8f6k-a1-m1-cB_8f6k-a1-m1-cD, 8f6k-a1-m1-cC_8f6k-a1-m1-cD
17 8f6k-a1-m1-cB 287 83 0.3034 0.0941 0.3253 3.47e-08 8f6k-a1-m1-cB_8f6k-a1-m1-cD
18 6vda-a1-m2-cA 86 59 0.2135 0.2209 0.3220 9.25e-05 6vda-a1-m1-cA_6vda-a1-m2-cA
19 6vda-a1-m1-cA 86 59 0.2135 0.2209 0.3220 9.25e-05 6vda-a1-m1-cA_6vda-a1-m2-cA
20 1k3y-a1-m1-cB 221 72 0.2247 0.0905 0.2778 0.015 1k3y-a1-m1-cA_1k3y-a1-m1-cB
21 1k3y-a1-m1-cA 221 72 0.2247 0.0905 0.2778 0.015 1k3y-a1-m1-cA_1k3y-a1-m1-cB
22 1fo1-a1-m1-cB 163 34 0.1461 0.0798 0.3824 5.3 1fo1-a1-m1-cB_1fo1-a1-m1-cA
23 3hdv-a3-m1-cB 123 27 0.1573 0.1138 0.5185 5.5 3hdv-a3-m1-cD_3hdv-a3-m1-cB
24 3hdv-a1-m1-cB 123 27 0.1573 0.1138 0.5185 5.5 3hdv-a1-m1-cC_3hdv-a1-m1-cB
25 3hdv-a1-m1-cC 118 27 0.1573 0.1186 0.5185 5.6 3hdv-a1-m1-cC_3hdv-a1-m1-cB
26 3hdv-a3-m1-cD 114 27 0.1573 0.1228 0.5185 5.7 3hdv-a3-m1-cD_3hdv-a3-m1-cB
27 6zjc-a2-m1-cD 220 72 0.2135 0.0864 0.2639 6.4 6zjc-a2-m1-cC_6zjc-a2-m1-cD
28 6zjc-a2-m1-cC 220 72 0.2135 0.0864 0.2639 6.4 6zjc-a2-m1-cC_6zjc-a2-m1-cD
29 1fo1-a1-m1-cA 215 34 0.1461 0.0605 0.3824 6.5 1fo1-a1-m1-cB_1fo1-a1-m1-cA
30 2cuy-a1-m1-cB 305 40 0.2022 0.0590 0.4500 8.7 2cuy-a1-m1-cA_2cuy-a1-m1-cB
31 2cuy-a1-m1-cA 305 40 0.2022 0.0590 0.4500 8.7 2cuy-a1-m1-cA_2cuy-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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