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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=79)
MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDFGTVELLLAIENRFDILVPITEFDR
DVWNTPNNIVNQLSELKRS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4bpg-a1-m2-cA 79 79 1.0000 1.0000 1.0000 1.23e-51 4bpg-a1-m2-cB_4bpg-a1-m2-cA
2 4bpg-a1-m1-cA 79 79 1.0000 1.0000 1.0000 1.23e-51 4bpg-a1-m2-cB_4bpg-a1-m1-cA
3 4bpg-a1-m2-cB 78 78 0.9873 1.0000 1.0000 6.48e-51 4bpg-a1-m2-cB_4bpg-a1-m1-cA, 4bpg-a1-m2-cB_4bpg-a1-m2-cA
4 3ek1-a2-m1-cG 482 33 0.1646 0.0270 0.3939 1.8 3ek1-a2-m1-cG_3ek1-a2-m1-cH
5 3ek1-a2-m1-cH 483 33 0.1646 0.0269 0.3939 1.8 3ek1-a2-m1-cE_3ek1-a2-m1-cH, 3ek1-a2-m1-cF_3ek1-a2-m1-cH, 3ek1-a2-m1-cG_3ek1-a2-m1-cH
6 3ek1-a2-m1-cF 483 33 0.1646 0.0269 0.3939 1.8 3ek1-a2-m1-cF_3ek1-a2-m1-cH
7 3ek1-a2-m1-cE 483 33 0.1646 0.0269 0.3939 1.8 3ek1-a2-m1-cE_3ek1-a2-m1-cH
8 2z6i-a1-m1-cB 311 22 0.1519 0.0386 0.5455 2.1 2z6i-a1-m1-cA_2z6i-a1-m1-cB
9 2rhs-a1-m1-cB 786 61 0.1899 0.0191 0.2459 3.1 2rhs-a1-m1-cD_2rhs-a1-m1-cB
10 2rhs-a1-m1-cD 785 61 0.1899 0.0191 0.2459 3.3 2rhs-a1-m1-cD_2rhs-a1-m1-cB
11 4ksa-a1-m1-cC 432 52 0.2532 0.0463 0.3846 6.7 4ksa-a1-m1-cD_4ksa-a1-m1-cC
12 4ksa-a1-m1-cA 433 52 0.2532 0.0462 0.3846 6.7 4ksa-a1-m1-cD_4ksa-a1-m1-cA
13 4ksa-a1-m1-cD 409 52 0.2532 0.0489 0.3846 7.0 4ksa-a1-m1-cD_4ksa-a1-m1-cA, 4ksa-a1-m1-cD_4ksa-a1-m1-cC
14 2fae-a8-m5-cB 77 29 0.1392 0.1429 0.3793 8.6 2fae-a8-m1-cA_2fae-a8-m5-cB
15 2fae-a8-m1-cA 77 29 0.1392 0.1429 0.3793 8.6 2fae-a8-m1-cA_2fae-a8-m5-cB
16 2fae-a3-m4-cB 77 29 0.1392 0.1429 0.3793 8.6 2fae-a3-m1-cA_2fae-a3-m4-cB
17 2fae-a3-m1-cA 77 29 0.1392 0.1429 0.3793 8.6 2fae-a3-m1-cA_2fae-a3-m4-cB
18 2fad-a3-m2-cB 77 29 0.1392 0.1429 0.3793 8.6 2fad-a3-m1-cA_2fad-a3-m2-cB
19 2fad-a3-m1-cA 77 29 0.1392 0.1429 0.3793 8.6 2fad-a3-m1-cA_2fad-a3-m2-cB
20 8dh7-a1-m1-cB 526 43 0.1899 0.0285 0.3488 9.1 8dh7-a1-m1-cA_8dh7-a1-m1-cB
21 8dh7-a1-m1-cA 526 43 0.1899 0.0285 0.3488 9.1 8dh7-a1-m1-cA_8dh7-a1-m1-cB
22 4lus-a2-m1-cD 378 65 0.2532 0.0529 0.3077 9.9 4lus-a2-m1-cD_4lus-a2-m1-cC
23 4lus-a2-m1-cC 380 65 0.2532 0.0526 0.3077 9.9 4lus-a2-m1-cD_4lus-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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