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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
MDFSKMSIVGRIGSEFTEHTNRYLKYSIASQPRQTNWYNITVFNEPQINFLTEYVRKGAL
VYVEADAANVFGTTLSLVQKDINLLKN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6cqk-a1-m1-cD 87 87 1.0000 1.0000 1.0000 9.45e-62 6cqk-a1-m1-cD_6cqk-a1-m1-cB
2 6cqk-a1-m1-cB 93 92 0.9885 0.9247 0.9348 9.33e-55 6cqk-a1-m1-cD_6cqk-a1-m1-cB
3 6cqo-a1-m1-cA 93 92 0.9540 0.8925 0.9022 1.25e-51 6cqo-a1-m1-cG_6cqo-a1-m1-cA
4 6cqo-a1-m1-cG 87 90 0.9425 0.9425 0.9111 3.08e-49 6cqo-a1-m1-cG_6cqo-a1-m1-cA
5 3ulp-a1-m1-cB 114 77 0.2184 0.1667 0.2468 1.20e-05 3ulp-a1-m1-cD_3ulp-a1-m1-cB
6 3ulp-a1-m1-cC 116 78 0.2184 0.1638 0.2436 1.54e-04 3ulp-a1-m1-cD_3ulp-a1-m1-cC
7 3ulp-a1-m1-cA 114 78 0.2184 0.1667 0.2436 1.57e-04 3ulp-a1-m1-cD_3ulp-a1-m1-cA
8 3pgz-a1-m1-cA 109 39 0.1494 0.1193 0.3333 1.64e-04 3pgz-a1-m1-cA_3pgz-a1-m1-cB
9 3pgz-a1-m1-cB 114 36 0.1379 0.1053 0.3333 2.73e-04 3pgz-a1-m1-cA_3pgz-a1-m1-cB
10 3ulp-a1-m1-cD 113 76 0.2069 0.1593 0.2368 3.03e-04 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
11 2dud-a2-m2-cB 92 64 0.2069 0.1957 0.2812 0.005 2dud-a2-m2-cB_2dud-a2-m1-cA, 2dud-a2-m2-cB_2dud-a2-m2-cA
12 3lgj-a1-m1-cB 97 67 0.1839 0.1649 0.2388 0.011 3lgj-a1-m1-cA_3lgj-a1-m1-cB
13 1kaw-a1-m1-cD 96 36 0.1494 0.1354 0.3611 0.023 1kaw-a1-m1-cC_1kaw-a1-m1-cD
14 1kaw-a1-m1-cC 96 36 0.1494 0.1354 0.3611 0.023 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
15 1kaw-a1-m1-cA 96 36 0.1494 0.1354 0.3611 0.023 1kaw-a1-m1-cA_1kaw-a1-m1-cC
16 3tqy-a1-m1-cD 96 67 0.2184 0.1979 0.2836 0.025 3tqy-a1-m1-cD_3tqy-a1-m1-cC
17 2dud-a2-m2-cA 95 67 0.1954 0.1789 0.2537 0.029 2dud-a2-m2-cB_2dud-a2-m2-cA
18 2dud-a2-m1-cA 95 67 0.1954 0.1789 0.2537 0.029 2dud-a2-m2-cB_2dud-a2-m1-cA
19 3lgj-a1-m1-cA 95 33 0.1264 0.1158 0.3333 0.097 3lgj-a1-m1-cA_3lgj-a1-m1-cB
20 4mz9-a1-m1-cD 114 32 0.1379 0.1053 0.3750 0.12 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
21 4mz9-a1-m1-cC 114 32 0.1379 0.1053 0.3750 0.12 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
22 4mz9-a1-m1-cB 114 32 0.1379 0.1053 0.3750 0.12 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
23 1sru-a1-m1-cC 96 32 0.1379 0.1250 0.3750 0.16 1sru-a1-m1-cC_1sru-a1-m1-cA
24 1sru-a1-m1-cD 101 32 0.1379 0.1188 0.3750 0.18 1sru-a1-m1-cA_1sru-a1-m1-cD
25 1sru-a1-m1-cA 100 32 0.1379 0.1200 0.3750 0.19 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
26 7f25-a1-m1-cB 106 32 0.1379 0.1132 0.3750 0.25 7f25-a1-m1-cA_7f25-a1-m1-cB
27 7f25-a1-m1-cA 106 32 0.1379 0.1132 0.3750 0.25 7f25-a1-m1-cA_7f25-a1-m1-cB
28 3tqy-a1-m1-cC 106 32 0.1379 0.1132 0.3750 0.41 3tqy-a1-m1-cD_3tqy-a1-m1-cC
29 2ztu-a1-m1-cA 235 43 0.1494 0.0553 0.3023 2.1 2ztu-a1-m1-cB_2ztu-a1-m1-cA
30 2ztu-a1-m1-cB 207 43 0.1494 0.0628 0.3023 2.3 2ztu-a1-m1-cB_2ztu-a1-m1-cA
31 7c9b-a1-m2-cA 233 43 0.1494 0.0558 0.3023 4.4 7c9b-a1-m1-cA_7c9b-a1-m2-cA
32 7c9b-a1-m1-cA 233 43 0.1494 0.0558 0.3023 4.4 7c9b-a1-m1-cA_7c9b-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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