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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=66)
MDNRQFLSLTGVSKVQSFDPKEILLETIQGVLSIKGEKLGLKAGQVEVEGLIDALVYPLE
HHHHHH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ks0-a1-m1-cB 66 66 1.0000 1.0000 1.0000 8.36e-43 2ks0-a1-m1-cA_2ks0-a1-m1-cB
2 2ks0-a1-m1-cA 66 66 1.0000 1.0000 1.0000 8.36e-43 2ks0-a1-m1-cA_2ks0-a1-m1-cB
3 3ipf-a1-m1-cA 69 69 0.9697 0.9275 0.9275 2.86e-38 3ipf-a1-m1-cB_3ipf-a1-m1-cA
4 3ipf-a1-m1-cB 65 65 0.9091 0.9231 0.9231 5.30e-35 3ipf-a1-m1-cB_3ipf-a1-m1-cA
5 8c9t-a2-m1-cC 228 61 0.3030 0.0877 0.3279 0.14 8c9t-a2-m1-cB_8c9t-a2-m1-cC
6 8dht-a2-m2-cD 439 48 0.2879 0.0433 0.3958 0.19 8dht-a2-m1-cB_8dht-a2-m2-cD
7 8dht-a2-m1-cB 439 48 0.2879 0.0433 0.3958 0.19 8dht-a2-m1-cB_8dht-a2-m2-cD
8 5j7n-a3-m3-cA 109 29 0.1818 0.1101 0.4138 0.38 5j7n-a3-m1-cA_5j7n-a3-m3-cA
9 5j7n-a3-m1-cA 109 29 0.1818 0.1101 0.4138 0.38 5j7n-a3-m1-cA_5j7n-a3-m3-cA
10 5j7n-a2-m2-cA 109 29 0.1818 0.1101 0.4138 0.38 5j7n-a2-m1-cA_5j7n-a2-m2-cA
11 5j7n-a2-m1-cA 109 29 0.1818 0.1101 0.4138 0.38 5j7n-a2-m1-cA_5j7n-a2-m2-cA
12 3e2t-a2-m2-cA 307 29 0.2121 0.0456 0.4828 2.1 3e2t-a2-m1-cA_3e2t-a2-m2-cA
13 3e2t-a2-m1-cA 307 29 0.2121 0.0456 0.4828 2.1 3e2t-a2-m1-cA_3e2t-a2-m2-cA
14 3gla-a1-m1-cA 97 29 0.1515 0.1031 0.3448 2.4 3gla-a1-m1-cA_3gla-a1-m1-cB
15 2zbr-a2-m2-cA 248 34 0.2576 0.0685 0.5000 2.4 2zbr-a2-m1-cA_2zbr-a2-m2-cA
16 2zbr-a2-m1-cA 248 34 0.2576 0.0685 0.5000 2.4 2zbr-a2-m1-cA_2zbr-a2-m2-cA
17 3gla-a1-m1-cB 99 29 0.1515 0.1010 0.3448 2.5 3gla-a1-m1-cA_3gla-a1-m1-cB
18 7m1t-a1-m1-cB 316 33 0.2121 0.0443 0.4242 3.2 7m1t-a1-m1-cB_7m1t-a1-m1-cA
19 4pic-a1-m1-cB 150 29 0.2121 0.0933 0.4828 4.1 4pic-a1-m1-cA_4pic-a1-m1-cB
20 4pic-a1-m1-cA 150 29 0.2121 0.0933 0.4828 4.1 4pic-a1-m1-cA_4pic-a1-m1-cB
21 1wb7-a1-m2-cB 205 42 0.2121 0.0683 0.3333 4.4 1wb7-a1-m1-cA_1wb7-a1-m2-cB, 1wb7-a1-m1-cB_1wb7-a1-m2-cB, 1wb7-a1-m2-cA_1wb7-a1-m2-cB
22 1wb7-a1-m2-cA 205 42 0.2121 0.0683 0.3333 4.4 1wb7-a1-m2-cA_1wb7-a1-m2-cB
23 1wb7-a1-m1-cB 205 42 0.2121 0.0683 0.3333 4.4 1wb7-a1-m1-cB_1wb7-a1-m2-cB
24 1wb7-a1-m1-cA 205 42 0.2121 0.0683 0.3333 4.4 1wb7-a1-m1-cA_1wb7-a1-m2-cB
25 2o03-a1-m2-cA 129 81 0.3636 0.1860 0.2963 7.9 2o03-a1-m1-cA_2o03-a1-m2-cA
26 2o03-a1-m1-cA 129 81 0.3636 0.1860 0.2963 7.9 2o03-a1-m1-cA_2o03-a1-m2-cA
27 7jg2-a1-m1-cB 224 26 0.1667 0.0491 0.4231 9.2 7jg2-a1-m1-cB_7jg2-a1-m1-cC
28 7jg1-a1-m1-cB 224 26 0.1667 0.0491 0.4231 9.2 7jg1-a1-m1-cB_7jg1-a1-m1-cD
29 7jg1-a1-m1-cD 228 26 0.1667 0.0482 0.4231 9.3 7jg1-a1-m1-cB_7jg1-a1-m1-cD
30 7jg2-a1-m1-cD 231 26 0.1667 0.0476 0.4231 9.3 7jg2-a1-m1-cA_7jg2-a1-m1-cD, 7jg2-a1-m1-cC_7jg2-a1-m1-cD
31 7jg2-a1-m1-cC 231 26 0.1667 0.0476 0.4231 9.3 7jg2-a1-m1-cA_7jg2-a1-m1-cC, 7jg2-a1-m1-cB_7jg2-a1-m1-cC, 7jg2-a1-m1-cC_7jg2-a1-m1-cD
32 7jg2-a1-m1-cA 231 26 0.1667 0.0476 0.4231 9.3 7jg2-a1-m1-cA_7jg2-a1-m1-cC, 7jg2-a1-m1-cA_7jg2-a1-m1-cD
33 5j6d-a3-m1-cA 292 29 0.1970 0.0445 0.4483 9.7 5j6d-a3-m1-cB_5j6d-a3-m1-cA

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Reference:
Jacob Schwartz et al.

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